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{'description': '## HG19 Reference Genome \n\nDefault HG19 reference genome used by GPF\n', 'labels': None}

{'description': '## CADD\nDownloaded from https://cadd.gs.washington.edu/download ;\n\nHigher values of raw scores\nhave relative meaning that a variant is more likely to be simulated (or \n"not observed") and therefore more likely to have deleterious effects.\n\nScaled scores are PHRED-like (-10*log10(rank/total)) scaled C-score ranking\na variant relative to all possible substitutions of the\nhuman genome (8.6x10^9).\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': 'TODO\n\ntabix -s 1 -b 2 -e 2 -f fordist_constraint_official_mpc_values_v2.txt.gz\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': '## phastCons46way placentals\n\nThis score is from:\n\n http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phastCons46way/README.txt\n\nThis directory contains compressed phastCons scores for multiple alignments\nof 45 vertebrate genomes to the human genome, plus an alternate set of scores\nfor the primates subset of species in the alignments, and an alternate set of\nscores for the placental mammal subset of species in the alignments.\n\nFor a description of the phastCons fixed step wiggle data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\nThe multiple alignments and methods description are at:\nhttp://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/\n\nFor a description of the phastCons data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\nAssemblies used in these alignments:\n\n - Human Homo sapiens Feb. 2009 hg19/GRCh37\n - Chimp Pan troglodytes Mar. 2006 panTro2\n - Gorilla Gorilla gorilla gorilla Oct. 2008 gorGor1\n - Orangutan Pongo pygmaeus abelii July 2007 ponAbe2\n - Rhesus Macaca mulatta Jan. 2006 rheMac2\n - Baboon Papio hamadryas Nov. 2008 papHam1\n - Marmoset Callithrix jacchus June 2007 calJac1\n - Tarsier Tarsius syrichta Aug. 2008 tarSyr1\n - Mouse lemur Microcebus murinus Jul. 2007 micMur1\n - Bushbaby Otolemur garnettii Dec. 2006 otoGar1\n - Tree shrew Tupaia belangeri Dec. 2006 tupBel1\n - Mouse Mus musculus July 2007 mm9 \n - Rat Rattus norvegicus Nov. 2004 rn4 \n - Kangaroo rat Dipodomys ordii Jul. 2008 dipOrd1\n - Guinea Pig Cavia porcellus Feb. 2008 cavPor3\n - Squirrel Spermophilus tridecemlineatus Feb. 2008 speTri1\n - Rabbit Oryctolagus cuniculus Apr. 2009 oryCun2\n - Pika Ochotona princeps Jul. 2008 ochPri2\n - Alpaca Vicugna pacos Jul. 2008 vicPac1\n - Dolphin Tursiops truncatus Feb. 2008 turTru1\n - Cow Bos taurus Oct. 2007 bosTau4\n - Horse Equus caballus Sep. 2007 equCab2\n - Cat Felis catus Mar. 2006 felCat3\n - Dog Canis lupus familiaris May 2005 canFam2\n - Microbat Myotis lucifugus Mar. 2006 myoLuc1\n - Megabat Pteropus vampyrus Jul. 2008 pteVam1\n - Hedgehog Erinaceus europaeus June 2006 eriEur1\n - Shrew Sorex araneus June 2006 sorAra1\n - Elephant Loxodonta africana Jul. 2009 loxAfr3\n - Rock hyrax Procavia capensis Jul. 2008 proCap1\n - Tenrec Echinops telfairi July 2005 echTel1\n - Armadillo Dasypus novemcinctus Jul. 2008 dasNov2\n - Sloth Choloepus hoffmanni Jul. 2008 choHof1\n - Wallaby Macropus eugenii Nov. 2007 macEug1\n - Opossum Monodelphis domestica Oct. 2006 monDom5\n - Platypus Ornithorhynchus anatinus Mar. 2007 ornAna1\n - Chicken Gallus gallus May 2006 galGal3\n - Zebra finch Taeniopygia guttata Jul. 2008 taeGut1\n - Lizard Anolis carolinensis Feb. 2007 anoCar1\n - X. tropicalis Xenopus tropicalis Aug. 2005 xenTro2\n - Tetraodon Tetraodon nigroviridis Mar. 2007 tetNig2\n - Fugu Takifugu rubripes Oct. 2004 fr2 \n - Stickleback Gasterosteus aculeatus Feb. 2006 gasAcu1\n - Medaka Oryzias latipes Oct. 2005 oryLat2\n - Zebrafish Danio rerio Dec. 2008 danRer6\n - Lamprey Petromyzon marinus Mar. 2007 petMar1\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': '## phastCons46way primates\n\nThis score is from:\n\n http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phastCons46way/README.txt\n\nThis directory contains compressed phastCons scores for multiple alignments\nof 45 vertebrate genomes to the human genome, plus an alternate set of scores\nfor the primates subset of species in the alignments, and an alternate set of\nscores for the placental mammal subset of species in the alignments.\n\nFor a description of the phastCons fixed step wiggle data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\nThe multiple alignments and methods description are at:\nhttp://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/\n\nFor a description of the phastCons data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\nAssemblies used in these alignments:\n\n - Human Homo sapiens Feb. 2009 hg19/GRCh37\n - Chimp Pan troglodytes Mar. 2006 panTro2\n - Gorilla Gorilla gorilla gorilla Oct. 2008 gorGor1\n - Orangutan Pongo pygmaeus abelii July 2007 ponAbe2\n - Rhesus Macaca mulatta Jan. 2006 rheMac2\n - Baboon Papio hamadryas Nov. 2008 papHam1\n - Marmoset Callithrix jacchus June 2007 calJac1\n - Tarsier Tarsius syrichta Aug. 2008 tarSyr1\n - Mouse lemur Microcebus murinus Jul. 2007 micMur1\n - Bushbaby Otolemur garnettii Dec. 2006 otoGar1\n - Tree shrew Tupaia belangeri Dec. 2006 tupBel1\n - Mouse Mus musculus July 2007 mm9 \n - Rat Rattus norvegicus Nov. 2004 rn4 \n - Kangaroo rat Dipodomys ordii Jul. 2008 dipOrd1\n - Guinea Pig Cavia porcellus Feb. 2008 cavPor3\n - Squirrel Spermophilus tridecemlineatus Feb. 2008 speTri1\n - Rabbit Oryctolagus cuniculus Apr. 2009 oryCun2\n - Pika Ochotona princeps Jul. 2008 ochPri2\n - Alpaca Vicugna pacos Jul. 2008 vicPac1\n - Dolphin Tursiops truncatus Feb. 2008 turTru1\n - Cow Bos taurus Oct. 2007 bosTau4\n - Horse Equus caballus Sep. 2007 equCab2\n - Cat Felis catus Mar. 2006 felCat3\n - Dog Canis lupus familiaris May 2005 canFam2\n - Microbat Myotis lucifugus Mar. 2006 myoLuc1\n - Megabat Pteropus vampyrus Jul. 2008 pteVam1\n - Hedgehog Erinaceus europaeus June 2006 eriEur1\n - Shrew Sorex araneus June 2006 sorAra1\n - Elephant Loxodonta africana Jul. 2009 loxAfr3\n - Rock hyrax Procavia capensis Jul. 2008 proCap1\n - Tenrec Echinops telfairi July 2005 echTel1\n - Armadillo Dasypus novemcinctus Jul. 2008 dasNov2\n - Sloth Choloepus hoffmanni Jul. 2008 choHof1\n - Wallaby Macropus eugenii Nov. 2007 macEug1\n - Opossum Monodelphis domestica Oct. 2006 monDom5\n - Platypus Ornithorhynchus anatinus Mar. 2007 ornAna1\n - Chicken Gallus gallus May 2006 galGal3\n - Zebra finch Taeniopygia guttata Jul. 2008 taeGut1\n - Lizard Anolis carolinensis Feb. 2007 anoCar1\n - X. tropicalis Xenopus tropicalis Aug. 2005 xenTro2\n - Tetraodon Tetraodon nigroviridis Mar. 2007 tetNig2\n - Fugu Takifugu rubripes Oct. 2004 fr2 \n - Stickleback Gasterosteus aculeatus Feb. 2006 gasAcu1\n - Medaka Oryzias latipes Oct. 2005 oryLat2\n - Zebrafish Danio rerio Dec. 2008 danRer6\n - Lamprey Petromyzon marinus Mar. 2007 petMar1\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': '## phastCons46way vertebrates\n\nThis score is from:\n\n http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phastCons46way/README.txt\n\nThis directory contains compressed phastCons scores for multiple alignments\nof 45 vertebrate genomes to the human genome, plus an alternate set of scores\nfor the primates subset of species in the alignments, and an alternate set of\nscores for the placental mammal subset of species in the alignments.\n\nFor a description of the phastCons fixed step wiggle data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\nThe multiple alignments and methods description are at:\nhttp://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/\n\nFor a description of the phastCons data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\nAssemblies used in these alignments:\n\n - Human Homo sapiens Feb. 2009 hg19/GRCh37\n - Chimp Pan troglodytes Mar. 2006 panTro2\n - Gorilla Gorilla gorilla gorilla Oct. 2008 gorGor1\n - Orangutan Pongo pygmaeus abelii July 2007 ponAbe2\n - Rhesus Macaca mulatta Jan. 2006 rheMac2\n - Baboon Papio hamadryas Nov. 2008 papHam1\n - Marmoset Callithrix jacchus June 2007 calJac1\n - Tarsier Tarsius syrichta Aug. 2008 tarSyr1\n - Mouse lemur Microcebus murinus Jul. 2007 micMur1\n - Bushbaby Otolemur garnettii Dec. 2006 otoGar1\n - Tree shrew Tupaia belangeri Dec. 2006 tupBel1\n - Mouse Mus musculus July 2007 mm9 \n - Rat Rattus norvegicus Nov. 2004 rn4 \n - Kangaroo rat Dipodomys ordii Jul. 2008 dipOrd1\n - Guinea Pig Cavia porcellus Feb. 2008 cavPor3\n - Squirrel Spermophilus tridecemlineatus Feb. 2008 speTri1\n - Rabbit Oryctolagus cuniculus Apr. 2009 oryCun2\n - Pika Ochotona princeps Jul. 2008 ochPri2\n - Alpaca Vicugna pacos Jul. 2008 vicPac1\n - Dolphin Tursiops truncatus Feb. 2008 turTru1\n - Cow Bos taurus Oct. 2007 bosTau4\n - Horse Equus caballus Sep. 2007 equCab2\n - Cat Felis catus Mar. 2006 felCat3\n - Dog Canis lupus familiaris May 2005 canFam2\n - Microbat Myotis lucifugus Mar. 2006 myoLuc1\n - Megabat Pteropus vampyrus Jul. 2008 pteVam1\n - Hedgehog Erinaceus europaeus June 2006 eriEur1\n - Shrew Sorex araneus June 2006 sorAra1\n - Elephant Loxodonta africana Jul. 2009 loxAfr3\n - Rock hyrax Procavia capensis Jul. 2008 proCap1\n - Tenrec Echinops telfairi July 2005 echTel1\n - Armadillo Dasypus novemcinctus Jul. 2008 dasNov2\n - Sloth Choloepus hoffmanni Jul. 2008 choHof1\n - Wallaby Macropus eugenii Nov. 2007 macEug1\n - Opossum Monodelphis domestica Oct. 2006 monDom5\n - Platypus Ornithorhynchus anatinus Mar. 2007 ornAna1\n - Chicken Gallus gallus May 2006 galGal3\n - Zebra finch Taeniopygia guttata Jul. 2008 taeGut1\n - Lizard Anolis carolinensis Feb. 2007 anoCar1\n - X. tropicalis Xenopus tropicalis Aug. 2005 xenTro2\n - Tetraodon Tetraodon nigroviridis Mar. 2007 tetNig2\n - Fugu Takifugu rubripes Oct. 2004 fr2 \n - Stickleback Gasterosteus aculeatus Feb. 2006 gasAcu1\n - Medaka Oryzias latipes Oct. 2005 oryLat2\n - Zebrafish Danio rerio Dec. 2008 danRer6\n - Lamprey Petromyzon marinus Mar. 2007 petMar1\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': '## phyloP46way placentals\n\nThis file is from:\n\n http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP46way/README.txt\n\nThis directory contains conservation scoring by phyloP (phylogenetic p-values)\nfrom the PHAST package (http://compgen.bscb.cornell.edu/phast/) for multiple\nalignments of 45 vertebrate genomes to the human genome, plus alternate sets\nof scores for the primate species and the placental mammal species in the\nalignments.\n\nThe phastCons data can be found at:\nhttp://hgdownload.cse.ucsc.edu/goldenPath/hg19/phastCons46way/\n\nThe multiple alignments and methods description are at:\nhttp://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/\n\nFor more information about this data, see the track\ndescription for the Conservation track:\n http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=cons46way\n\nAssemblies used in these alignments:\n\n - Human Homo sapiens Feb. 2009 hg19/GRCh37\n - Chimp Pan troglodytes Mar. 2006 panTro2\n - Gorilla Gorilla gorilla gorilla Oct. 2008 gorGor1\n - Orangutan Pongo pygmaeus abelii July 2007 ponAbe2\n - Rhesus Macaca mulatta Jan. 2006 rheMac2\n - Baboon Papio hamadryas Nov. 2008 papHam1\n - Marmoset Callithrix jacchus June 2007 calJac1\n - Tarsier Tarsius syrichta Aug. 2008 tarSyr1\n - Mouse lemur Microcebus murinus Jul. 2007 micMur1\n - Bushbaby Otolemur garnettii Dec. 2006 otoGar1\n - Tree shrew Tupaia belangeri Dec. 2006 tupBel1\n - Mouse Mus musculus July 2007 mm9 \n - Rat Rattus norvegicus Nov. 2004 rn4 \n - Kangaroo rat Dipodomys ordii Jul. 2008 dipOrd1\n - Guinea Pig Cavia porcellus Feb. 2008 cavPor3\n - Squirrel Spermophilus tridecemlineatus Feb. 2008 speTri1\n - Rabbit Oryctolagus cuniculus Apr. 2009 oryCun2\n - Pika Ochotona princeps Jul. 2008 ochPri2\n - Alpaca Vicugna pacos Jul. 2008 vicPac1\n - Dolphin Tursiops truncatus Feb. 2008 turTru1\n - Cow Bos taurus Oct. 2007 bosTau4\n - Horse Equus caballus Sep. 2007 equCab2\n - Cat Felis catus Mar. 2006 felCat3\n - Dog Canis lupus familiaris May 2005 canFam2\n - Microbat Myotis lucifugus Mar. 2006 myoLuc1\n - Megabat Pteropus vampyrus Jul. 2008 pteVam1\n - Hedgehog Erinaceus europaeus June 2006 eriEur1\n - Shrew Sorex araneus June 2006 sorAra1\n - Elephant Loxodonta africana Jul. 2009 loxAfr3\n - Rock hyrax Procavia capensis Jul. 2008 proCap1\n - Tenrec Echinops telfairi July 2005 echTel1\n - Armadillo Dasypus novemcinctus Jul. 2008 dasNov2\n - Sloth Choloepus hoffmanni Jul. 2008 choHof1\n - Wallaby Macropus eugenii Nov. 2007 macEug1\n - Opossum Monodelphis domestica Oct. 2006 monDom5\n - Platypus Ornithorhynchus anatinus Mar. 2007 ornAna1\n - Chicken Gallus gallus May 2006 galGal3\n - Zebra finch Taeniopygia guttata Jul. 2008 taeGut1\n - Lizard Anolis carolinensis Feb. 2007 anoCar1\n - X. tropicalis Xenopus tropicalis Aug. 2005 xenTro2\n - Tetraodon Tetraodon nigroviridis Mar. 2007 tetNig2\n - Fugu Takifugu rubripes Oct. 2004 fr2 \n - Stickleback Gasterosteus aculeatus Feb. 2006 gasAcu1\n - Medaka Oryzias latipes Oct. 2005 oryLat2\n - Zebrafish Danio rerio Dec. 2008 danRer6\n - Lamprey Petromyzon marinus Mar. 2007 petMar1\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': '## phyloP46way primates\n\nThis file is from:\n\n http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP46way/README.txt\n\nThis directory contains conservation scoring by phyloP (phylogenetic p-values)\nfrom the PHAST package (http://compgen.bscb.cornell.edu/phast/) for multiple\nalignments of 45 vertebrate genomes to the human genome, plus alternate sets\nof scores for the primate species and the placental mammal species in the\nalignments.\n\nThe phastCons data can be found at:\nhttp://hgdownload.cse.ucsc.edu/goldenPath/hg19/phastCons46way/\n\nThe multiple alignments and methods description are at:\nhttp://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/\n\nFor more information about this data, see the track\ndescription for the Conservation track:\n http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=cons46way\n\nAssemblies used in these alignments:\n\n - Human Homo sapiens Feb. 2009 hg19/GRCh37\n - Chimp Pan troglodytes Mar. 2006 panTro2\n - Gorilla Gorilla gorilla gorilla Oct. 2008 gorGor1\n - Orangutan Pongo pygmaeus abelii July 2007 ponAbe2\n - Rhesus Macaca mulatta Jan. 2006 rheMac2\n - Baboon Papio hamadryas Nov. 2008 papHam1\n - Marmoset Callithrix jacchus June 2007 calJac1\n - Tarsier Tarsius syrichta Aug. 2008 tarSyr1\n - Mouse lemur Microcebus murinus Jul. 2007 micMur1\n - Bushbaby Otolemur garnettii Dec. 2006 otoGar1\n - Tree shrew Tupaia belangeri Dec. 2006 tupBel1\n - Mouse Mus musculus July 2007 mm9 \n - Rat Rattus norvegicus Nov. 2004 rn4 \n - Kangaroo rat Dipodomys ordii Jul. 2008 dipOrd1\n - Guinea Pig Cavia porcellus Feb. 2008 cavPor3\n - Squirrel Spermophilus tridecemlineatus Feb. 2008 speTri1\n - Rabbit Oryctolagus cuniculus Apr. 2009 oryCun2\n - Pika Ochotona princeps Jul. 2008 ochPri2\n - Alpaca Vicugna pacos Jul. 2008 vicPac1\n - Dolphin Tursiops truncatus Feb. 2008 turTru1\n - Cow Bos taurus Oct. 2007 bosTau4\n - Horse Equus caballus Sep. 2007 equCab2\n - Cat Felis catus Mar. 2006 felCat3\n - Dog Canis lupus familiaris May 2005 canFam2\n - Microbat Myotis lucifugus Mar. 2006 myoLuc1\n - Megabat Pteropus vampyrus Jul. 2008 pteVam1\n - Hedgehog Erinaceus europaeus June 2006 eriEur1\n - Shrew Sorex araneus June 2006 sorAra1\n - Elephant Loxodonta africana Jul. 2009 loxAfr3\n - Rock hyrax Procavia capensis Jul. 2008 proCap1\n - Tenrec Echinops telfairi July 2005 echTel1\n - Armadillo Dasypus novemcinctus Jul. 2008 dasNov2\n - Sloth Choloepus hoffmanni Jul. 2008 choHof1\n - Wallaby Macropus eugenii Nov. 2007 macEug1\n - Opossum Monodelphis domestica Oct. 2006 monDom5\n - Platypus Ornithorhynchus anatinus Mar. 2007 ornAna1\n - Chicken Gallus gallus May 2006 galGal3\n - Zebra finch Taeniopygia guttata Jul. 2008 taeGut1\n - Lizard Anolis carolinensis Feb. 2007 anoCar1\n - X. tropicalis Xenopus tropicalis Aug. 2005 xenTro2\n - Tetraodon Tetraodon nigroviridis Mar. 2007 tetNig2\n - Fugu Takifugu rubripes Oct. 2004 fr2 \n - Stickleback Gasterosteus aculeatus Feb. 2006 gasAcu1\n - Medaka Oryzias latipes Oct. 2005 oryLat2\n - Zebrafish Danio rerio Dec. 2008 danRer6\n - Lamprey Petromyzon marinus Mar. 2007 petMar1\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': '## phyloP46way vertebrates\n\nThis file is from:\n\n http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP46way/README.txt\n\nThis directory contains conservation scoring by phyloP (phylogenetic p-values)\nfrom the PHAST package (http://compgen.bscb.cornell.edu/phast/) for multiple\nalignments of 45 vertebrate genomes to the human genome, plus alternate sets\nof scores for the primate species and the placental mammal species in the\nalignments.\n\nThe phastCons data can be found at:\nhttp://hgdownload.cse.ucsc.edu/goldenPath/hg19/phastCons46way/\n\nThe multiple alignments and methods description are at:\nhttp://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/\n\nFor more information about this data, see the track\ndescription for the Conservation track:\n http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=cons46way\n\nAssemblies used in these alignments:\n\n - Human Homo sapiens Feb. 2009 hg19/GRCh37\n - Chimp Pan troglodytes Mar. 2006 panTro2\n - Gorilla Gorilla gorilla gorilla Oct. 2008 gorGor1\n - Orangutan Pongo pygmaeus abelii July 2007 ponAbe2\n - Rhesus Macaca mulatta Jan. 2006 rheMac2\n - Baboon Papio hamadryas Nov. 2008 papHam1\n - Marmoset Callithrix jacchus June 2007 calJac1\n - Tarsier Tarsius syrichta Aug. 2008 tarSyr1\n - Mouse lemur Microcebus murinus Jul. 2007 micMur1\n - Bushbaby Otolemur garnettii Dec. 2006 otoGar1\n - Tree shrew Tupaia belangeri Dec. 2006 tupBel1\n - Mouse Mus musculus July 2007 mm9 \n - Rat Rattus norvegicus Nov. 2004 rn4 \n - Kangaroo rat Dipodomys ordii Jul. 2008 dipOrd1\n - Guinea Pig Cavia porcellus Feb. 2008 cavPor3\n - Squirrel Spermophilus tridecemlineatus Feb. 2008 speTri1\n - Rabbit Oryctolagus cuniculus Apr. 2009 oryCun2\n - Pika Ochotona princeps Jul. 2008 ochPri2\n - Alpaca Vicugna pacos Jul. 2008 vicPac1\n - Dolphin Tursiops truncatus Feb. 2008 turTru1\n - Cow Bos taurus Oct. 2007 bosTau4\n - Horse Equus caballus Sep. 2007 equCab2\n - Cat Felis catus Mar. 2006 felCat3\n - Dog Canis lupus familiaris May 2005 canFam2\n - Microbat Myotis lucifugus Mar. 2006 myoLuc1\n - Megabat Pteropus vampyrus Jul. 2008 pteVam1\n - Hedgehog Erinaceus europaeus June 2006 eriEur1\n - Shrew Sorex araneus June 2006 sorAra1\n - Elephant Loxodonta africana Jul. 2009 loxAfr3\n - Rock hyrax Procavia capensis Jul. 2008 proCap1\n - Tenrec Echinops telfairi July 2005 echTel1\n - Armadillo Dasypus novemcinctus Jul. 2008 dasNov2\n - Sloth Choloepus hoffmanni Jul. 2008 choHof1\n - Wallaby Macropus eugenii Nov. 2007 macEug1\n - Opossum Monodelphis domestica Oct. 2006 monDom5\n - Platypus Ornithorhynchus anatinus Mar. 2007 ornAna1\n - Chicken Gallus gallus May 2006 galGal3\n - Zebra finch Taeniopygia guttata Jul. 2008 taeGut1\n - Lizard Anolis carolinensis Feb. 2007 anoCar1\n - X. tropicalis Xenopus tropicalis Aug. 2005 xenTro2\n - Tetraodon Tetraodon nigroviridis Mar. 2007 tetNig2\n - Fugu Takifugu rubripes Oct. 2004 fr2 \n - Stickleback Gasterosteus aculeatus Feb. 2006 gasAcu1\n - Medaka Oryzias latipes Oct. 2005 oryLat2\n - Zebrafish Danio rerio Dec. 2008 danRer6\n - Lamprey Petromyzon marinus Mar. 2007 petMar1\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': '## gnomAD exomes v2.1.1\n\nOriginal gnomAD exomes v2.1.1 is downloaded on October 19, 2020.\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': '## gnomAD genomes v2.1.1 liftover\n\nOriginal gnomAD genomes v2.1.1 liftover is downloaded on October 19, 2020\nfrom https://gnomad.broadinstitute.org/.\n\ntabix -s 1 -b 2 -e 2 -f gnomad..r2.1.1.extract.tsv.gz\n', 'labels': {'reference_genome': 'hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174'}}

{'description': '## refSeq gene models for HG38 from 20170601\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## refSeq gene models for HG38 from 2020-03\n\nDefault gene models used by GPF for HG38.\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## HG38 Reference Genome \n\nDefault HG38 reference genome used by GPF\n', 'labels': None}

{'description': '## CADD GRCh38-v1.4\nTODO\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## CADD GRCh38-v1.6\nTODO\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': 'ClinVar resource downloaded on 2022-11-05. Chromosome names are\nremapped to have `chr` prefix.\n\nClinVar is a freely accessible, public archive of reports of the \nrelationships among human variations and phenotypes, with supporting \nevidence. ClinVar thus facilitates access to and communication about \nthe relationships asserted between human variation and observed health \nstatus, and the history of that interpretation. ClinVar processes \nsubmissions reporting variants found in patient samples, assertions \nmade regarding their clinical significance, information about the submitter, \nand other supporting data. The alleles described in submissions are mapped \nto reference sequences, and reported according to the HGVS standard. \nClinVar then presents the data for interactive users as well as those \nwishing to use ClinVar in daily workflows and other local applications. \nClinVar works in collaboration with interested organizations to meet \nthe needs of the medical genetics community as efficiently and effectively \nas possible\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': "## phastConst100way\n\nThis file is from:\n\n http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons100way/README.txt\n\nThis score contains compressed phastCons scores for multiple alignments\nof 99 vertebrate genomes to the human genome.\n\nFor a description of the phastCons fixed step wiggle data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\n\nAssemblies used in these alignments:\n\n== Primate subset ==\nHuman Homo sapiens Dec 2013 GRCh38/hg38 Reference species\nChimp Pan troglodytes Feb 2011 CSAC 2.1.4/panTro4 Syntenic net \nGorilla Gorilla gorilla gorilla May 2011 gorGor3.1/gorGor3 Reciprocal best net \nOrangutan Pongo pygmaeus abelii July 2007 WUGSC 2.0.2/ponAbe2 Reciprocal best net \nGibbon Nomascus leucogenys Oct 2012 GGSC Nleu3.0/nomLeu3 Syntenic net \nRhesus Macaca mulatta Oct 2010 BGI CR_1.0/rheMac3 Syntenic net \nCrab-eating macaque Macaca fascicularis Jun 2013 Macaca_fascicularis_5.0/macFas5 Syntenic net \nBaboon Papio hamadryas Mar 2012 Baylor Panu_2.0/papAnu2 Reciprocal best net \nGreen monkey Chlorocebus sabaeus Mar 2014 Chlorocebus_sabeus 1.1/chlSab2 Syntenic net \nMarmoset Callithrix jacchus Mar 2009 WUGSC 3.2/calJac3 Syntenic net \nSquirrel monkey Saimiri boliviensis Oct 2011 Broad/saiBol1 Syntenic net \nBushbaby Otolemur garnettii Mar 2011 Broad/otoGar3 Syntenic net \n\n== Euarchontoglires subset ==\nChinese tree shrew Tupaia chinensis Jan 2013 TupChi_1.0/tupChi1 Syntenic net \nSquirrel Spermophilus tridecemlineatus Nov 2011 Broad/speTri2 Syntenic net \nLesser Egyptian jerboa Jaculus jaculus May 2012 JacJac1.0/jacJac1 Syntenic net \nPrairie vole Microtus ochrogaster Oct 2012 MicOch1.0/micOch1 Syntenic net \nChinese hamster Cricetulus griseus Jul 2013 C_griseus_v1.0/criGri1 Syntenic net \nGolden hamster Mesocricetus auratus Mar 2013 MesAur1.0/mesAur1 Syntenic net \nMouse Mus musculus Dec 2011 GRCm38/mm10 Syntenic net \nRat Rattus norvegicus Jul 2014 RGSC 6.0/rn6 Syntenic net \nNaked mole-rat Heterocephalus glaber Jan 2012 Broad HetGla_female_1.0/hetGla2 Syntenic net \nGuinea pig Cavia porcellus Feb 2008 Broad/cavPor3 Syntenic net \nChinchilla Chinchilla lanigera May 2012 ChiLan1.0/chiLan1 Syntenic net \nBrush-tailed rat Octodon degus Apr 2012 OctDeg1.0/octDeg1 Syntenic net \nRabbit Oryctolagus cuniculus Apr 2009 Broad/oryCun2 Syntenic net \nPika Ochotona princeps May 2012 OchPri3.0/ochPri3 Syntenic net \n\n== Laurasiatheria subset ==\nPig Sus scrofa Aug 2011 SGSC Sscrofa10.2/susScr3 Syntenic net \nAlpaca Vicugna pacos Mar 2013 Vicugna_pacos-2.0.1/vicPac2 Syntenic net \nBactrian camel Camelus ferus Dec 2011 CB1/camFer1 Syntenic net \nDolphin Tursiops truncatus Oct 2011 Baylor Ttru_1.4/turTru2 Reciprocal best net \nKiller whale Orcinus orca Jan 2013 Oorc_1.1/orcOrc1 Syntenic net \nTibetan antelope Pantholops hodgsonii May 2013 PHO1.0/panHod1 Syntenic net \nCow Bos taurus Jun 2014 UMD_3.1.1/bosTau8 Syntenic net \nSheep Ovis aries Aug 2012 ISGC Oar_v3.1/oviAri3 Syntenic net \nDomestic goat Capra hircus May 2012 CHIR_1.0/capHir1 Syntenic net \nHorse Equus caballus Sep 2007 Broad/equCab2 Syntenic net \nWhite rhinoceros Ceratotherium simum May 2012 CerSimSim1.0/cerSim1 Syntenic net \nCat Felis catus Nov 2014 ICGSC Felis_catus 8.0/felCat8 Syntenic net \nDog Canis lupus familiaris Sep 2011 Broad CanFam3.1/canFam3 Syntenic net \nFerret Mustela putorius furo Apr 2011 MusPutFur1.0/musFur1 Syntenic net \nPanda Ailuropoda melanoleuca Dec 2009 BGI-Shenzhen 1.0/ailMel1 Syntenic net \nPacific walrus Odobenus rosmarus divergens Jan 2013 Oros_1.0/odoRosDiv1 Syntenic net \nWeddell seal Leptonychotes weddellii Mar 2013 LepWed1.0/lepWed1 Reciprocal best net \nBlack flying-fox Pteropus alecto Aug 2012 ASM32557v1/pteAle1 Syntenic net \nMegabat Pteropus vampyrus Jul 2008 Broad/pteVam1 Reciprocal best net \nDavid's myotis bat Myotis davidii Aug 2012 ASM32734v1/myoDav1 Syntenic net \nMicrobat Myotis lucifugus Jul 2010 Broad Institute Myoluc2.0/myoLuc2 Syntenic net \nBig brown bat Eptesicus fuscus Jul 2012 EptFus1.0/eptFus1 Syntenic net \nHedgehog Erinaceus europaeus May 2012 EriEur2.0/eriEur2 Syntenic net \nShrew Sorex araneus Aug 2008 Broad/sorAra2 Syntenic net \nStar-nosed mole Condylura cristata Mar 2012 ConCri1.0/conCri1 Syntenic net \n\n== Afrotheria subset ==\nElephant Loxodonta africana Jul 2009 Broad/loxAfr3 Syntenic net \nCape elephant shrew Elephantulus edwardii Aug 2012 EleEdw1.0/eleEdw1 Syntenic net \nManatee Trichechus manatus latirostris Oct 2011 Broad v1.0/triMan1 Syntenic net \nCape golden mole Chrysochloris asiatica Aug 2012 ChrAsi1.0/chrAsi1 Syntenic net \nTenrec Echinops telfairi Nov 2012 Broad/echTel2 Syntenic net \nAardvark Orycteropus afer afer May 2012 OryAfe1.0/oryAfe1 Syntenic net \n\n== Mammal subset ==\nArmadillo Dasypus novemcinctus Dec 2011 Baylor/dasNov3 Syntenic net \nOpossum Monodelphis domestica Oct 2006 Broad/monDom5 Net \nTasmanian devil Sarcophilus harrisii Feb 2011 WTSI Devil_ref v7.0/sarHar1 Net \nWallaby Macropus eugenii Sep 2009 TWGS Meug_1.1/macEug2 Reciprocal best net \nPlatypus Ornithorhynchus anatinus Mar 2007 WUGSC 5.0.1/ornAna1 Reciprocal best net \n\n== Aves subset ==\nSaker falcon Falco cherrug Feb 2013 F_cherrug_v1.0/falChe1 Net \nPeregrine falcon Falco peregrinus Feb 2013 F_peregrinus_v1.0/falPer1 Net \nCollared flycatcher Ficedula albicollis Jun 2013 FicAlb1.5/ficAlb2 Net \nWhite-throated sparrow Zonotrichia albicollis Apr 2013 ASM38545v1/zonAlb1 Net \nMedium ground finch Geospiza fortis Apr 2012 GeoFor_1.0/geoFor1 Net \nZebra finch Taeniopygia guttata Feb 2013 WashU taeGut324/taeGut2 Net \nTibetan ground jay Pseudopodoces humilis Jan 2013 PseHum1.0/pseHum1 Net \nBudgerigar Melopsittacus undulatus Sep 2011 WUSTL v6.3/melUnd1 Net \nParrot Amazona vittata Jan 2013 AV1/amaVit1 Net \nScarlet macaw Ara macao Jun 2013 SMACv1.1/araMac1 Net \nRock pigeon Columba livia Feb 2013 Cliv_1.0/colLiv1 Net \nMallard duck Anas platyrhynchos Apr 2013 BGI_duck_1.0/anaPla1 Net \nChicken Gallus gallus Nov 2011 ICGSC Gallus_gallus-4.0/galGal4 Net \nTurkey Meleagris gallopavo Dec 2009 TGC Turkey_2.01/melGal1 Net \n\n== Sarcopterygii subset ==\nAmerican alligator Alligator mississippiensis Aug 2012 allMis0.2/allMis1 Net \nGreen seaturtle Chelonia mydas Mar 2013 CheMyd_1.0/cheMyd1 Net \nPainted turtle Chrysemys picta bellii Mar 2014 v3.0.3/chrPic2 Net \nChinese softshell turtle Pelodiscus sinensis Oct 2011 PelSin_1.0/pelSin1 Net \nSpiny softshell turtle Apalone spinifera May 2013 ASM38561v1/apaSpi1 Net \nLizard Anolis carolinensis May 2010 Broad AnoCar2.0/anoCar2 Net \nX. tropicalis Xenopus tropicalis Sep 2012 JGI 7.0/xenTro7 Net \nCoelacanth Latimeria chalumnae Aug 2011 Broad/latCha1 Net \n\n== Fish subset ==\nTetraodon Tetraodon nigroviridis Mar 2007 Genoscope 8.0/tetNig2 Net \nFugu Takifugu rubripes Oct 2011 FUGU5/fr3 Net \nYellowbelly pufferfish Takifugu flavidus May 2013 version 1 of Takifugu flavidus genome/takFla1 Net \nNile tilapia Oreochromis niloticus Jan 2011 Broad oreNil1.1/oreNil2 Net \nPrincess of Burundi Neolamprologus brichardi May 2011 NeoBri1.0/neoBri1 Net \nBurton's mouthbreeder Haplochromis burtoni Oct 2011 AstBur1.0/hapBur1 Net \nZebra mbuna Maylandia zebra Mar 2012 MetZeb1.1/mayZeb1 Net \nPundamilia nyererei Pundamilia nyererei Oct 2011 PunNye1.0/punNye1 Net \nMedaka Oryzias latipes Oct 2005 NIG/UT MEDAKA1/oryLat2 Net \nSouthern platyfish Xiphophorus maculatus Jan 2012 Xiphophorus_maculatus-4.4.2/xipMac1 Net \nStickleback Gasterosteus aculeatus Feb 2006 Broad/gasAcu1 Net \nAtlantic cod Gadus morhua May 2010 Genofisk GadMor_May2010/gadMor1 Net \nZebrafish Danio rerio Sep 2014 Zv10/danRer10 Net \nMexican tetra (cavefish) Astyanax mexicanus Apr 2013 Astyanax_mexicanus-1.0.2/astMex1 Net \nSpotted gar Lepisosteus oculatus Dec 2011 LepOcu1/lepOcu1 Net \nLamprey Petromyzon marinus Sep 2010 WUGSC 7.0/petMar2 Net \n", 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## phastCons20way\n\nThis file is from:\n\n http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons20way/README.txt\n\nThis score contains compressed phastCons scores for multiple alignments\nof 19 genome sequences to the human genome.\n\nFor a description of the phastCons fixed step wiggle data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\nThe multiple alignments and methods description are at:\nhttp://hgdownload.cse.ucsc.edu/goldenPath/hg38/multiz20way/\n\nFor more information about this data, see the track\ndescription for the Conservation track:\n http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=tarSyr2&g=cons20way\n\nAssemblies used in these alignments: (alignment\n type)\n\nHuman - Homo sapiens Dec. 2013 (GRCh38/hg38) reference\n\nBaboon - Papio anubis Mar. 2012 (Baylor Panu_2.0/papAnu2) syntenic\nBushbaby - Otolemur garnettii Mar. 2011 (Broad/otoGar3) reciprocal best\nBonobo - Pan paniscus May. 2012 (Max-Planck/panPan1) reciprocal best\nChimp - Pan troglodytes Feb. 2011 (CSAC 2.1.4/panTro4) syntenic\nCrab-eating macaque - Macaca fascicularis\n Jun 2013 (Macaca_fascicularis_5.0/macFas5) syntenic\nGibbon - Nomascus leucogenys Oct. 2012 (GGSC Nleu3.0/nomLeu3) syntenic\nGolden snub-nosed monkey - Rhinopithecus roxellana\n Oct. 2014 (Rrox_v1/rhiRox1) reciprocal best\nGorilla - Gorilla gorilla gorilla May 2011 (gorGor3.1/gorGor3) reciprocal best\nGreen monkey - Chlorocebus sabaeus\n Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) syntenic\nMarmoset - Callithrix jacchus Mar. 2009 (WUGSC 3.2/calJac3) syntenic\nMouse lemur - Microcebus murinus Jul. 2007 (Broad/micMur1) reciprocal best\nOrangutan - Pongo pygmaeus abelii Jul. 2007 (WUGSC 2.0.2/ponAbe2) syntenic\nProboscis monkey - Nasalis larvatus\n Nov. 2014 (Charlie1.0/nasLar1) reciprocal best\nRhesus - Macaca mulatta Oct. 2010 (BGI CR_1.0/rheMac3) syntenic\nSquirrel monkey - Saimiri boliviensis Oct. 2011 (Broad/saiBol1) reciprocal best\nTarsier - Tarsius syrichta\n Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) reciprocal best\nTree shrew - Tupaia belangeri Dec. 2006 (Broad/tupBel1) reciprocal best\nMouse - Mus musculus Dec. 2011 (GRCm38/mm10) syntenic\nDog - Canis lupus familiaris Sep. 2011 (Broad CanFam3.1/canFam3) syntenic\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': "## phastCons30way\n\nThis file is from:\n\n http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons30way/README.txt\n\nThis score contains compressed phastCons scores for multiple alignments\nof 29 genome sequences to the human genome.\n\nFor a description of the phastCons fixed step wiggle data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\nFor more information about this data, see the track\ndescription for the Conservation track:\n http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=tarSyr2&g=cons30way\n\n-----------------------------------------------------------------------------\nAssemblies used in these alignments: (alignment type)\n\nHuman - Homo sapiens\n Dec. 2013 (GRCh38/hg38) (reference)\nAngolan colobus - Colobus angolensis palliatus\n Mar. 2015 (Cang.pa_1.0/colAng1) (syntenic)\nArmadillo - Dasypus novemcinctus\n Dec. 2011 (Baylor/dasNov3) (syntenic)\nBaboon - Papio anubis\n Feb. 2013 (Baylor Panu_2.0/papAnu3) (reciprocal best)\nBlack lemur - Eulemur macaco\n Aug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1) (reciprocal best)\nBlack snub-nosed monkey - Rhinopithecus bieti\n Aug. 2016 (ASM169854v1/rhiBie1) (reciprocal best)\nBonobo - Pan paniscus\n Aug. 2015 (MPI-EVA panpan1.1/panPan2) (syntenic)\nBushbaby - Otolemur garnettii\n Mar. 2011 (Broad/otoGar3) (syntenic)\nChimp - Pan troglodytes\n May 2016 (Pan_tro 3.0/panTro5) (syntenic)\nCoquerel's sifaka - Propithecus coquereli\n Mar. 2015 (Pcoq_1.0/proCoq1) (syntenic)\nCrab-eating macaque - Macaca fascicularis\n Jun. 2013 (Macaca_fascicularis_5.0/macFas5) (syntenic)\nDog - Canis lupus familiaris\n Sep. 2011 (Broad CanFam3.1/canFam3) (syntenic)\nDrill - Mandrillus leucophaeus\n Mar. 2015 (Mleu.le_1.0/manLeu1) (syntenic)\nGibbon - Nomascus leucogenys\n Oct. 2012 (GGSC Nleu3.0/nomLeu3) (syntenic)\nGolden snub-nosed monkey - Rhinopithecus roxellana\n Oct. 2014 (Rrox_v1/rhiRox1) (reciprocal best)\nGorilla - Gorilla gorilla gorilla\n Mar. 2016 (GSMRT3/gorGor5) (syntenic)\nGreen monkey - Chlorocebus sabaeus\n Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) (syntenic)\nMa's night monkey - Aotus nancymaae\n Jun. 2017 (Anan_2.0/aotNan1) (syntenic)\nMarmoset - Callithrix jacchus\n March 2009 (WUGSC 3.2/calJac3) (syntenic)\nMouse - Mus musculus\n Dec. 2011 (GRCm38/mm10) (syntenic)\nMouse lemur - Microcebus murinus\n Feb. 2017 (Mmur_3.0/micMur3) (syntenic)\nOrangutan - Pongo pygmaeus abelii\n July 2007 (WUGSC 2.0.2/ponAbe2) (reciprocal best)\nPig-tailed macaque - Macaca nemestrina\n Mar. 2015 (Mnem_1.0/macNem1) (syntenic)\nProboscis monkey - Nasalis larvatus\n Nov. 2014 (Charlie1.0/nasLar1) (reciprocal best)\nRhesus - Macaca mulatta\n Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (syntenic)\nSclater's lemur - Eulemur flavifrons\n Aug. 2015 (Eflavifronsk33QCA/eulFla1) (reciprocal best)\nSooty mangabey - Cercocebus atys\n Mar. 2015 (Caty_1.0/cerAty1) (syntenic)\nSquirrel monkey - Saimiri boliviensis\n Oct. 2011 (Broad/saiBol1) (syntenic)\nTarsier - Tarsius syrichta\n Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) (reciprocal best)\nWhite-faced sapajou - Cebus capucinus imitator\n Apr. 2016 (Cebus_imitator-1.0/cebCap1) (syntenic)\n", 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## phastConst7way\n\nDownloaded from http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons7way/\n\n```\nAssemblies used in these alignments: (alignment\n type)\n\nHuman - Homo sapiens Dec. 2013 (GRCh38/hg38) reference\nChimp - Pan troglodytes Feb. 2011 (GSAC 2.1.4/panTro4) syntenic\nRhesus - Macaca mulatta Oct. 2010 (BGI CR_1.0/rheMac3) syntenic\nDog - Canis lupus familiaris Sep. 2011 (Broad/canFam3) syntenic\nMouse - Mus musculus Dec. 2011 (GRCm38/mm10) syntenic\nRat - Rattus norvegicus Mar. 2012 (RGSC Rnor 5.0/rn5) syntenic\nOpossum - Monodelphis domestica Oct. 2006 (Broad/monDom5) net\n```\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## phyloP100way\n\nTODO\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## phyloP20way\n\nTODO\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## phyloP30way\n\nTODO\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## phyloP7way\n\nTODO\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': 'TODO\n\nexported from SFARI_SSC_WGS_CSHL using \n`gpf_validation_data/data_hg38/exports/SFARI_SSC_WGS_CSHL_frequency` scripts\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## gnomAD exomes v2.1.1 liftover\n\nOriginal gnomAD exomes v2.1.1 liftover is downloaded on October 19, 2020.\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## gnomAD genomes v2.1.1 liftover\n\nOriginal gnomAD genomes v2.1.1 liftover is downloaded on October 19, 2020\nfrom https://gnomad.broadinstitute.org/.\n\ntabix -s 1 -b 2 -e 2 -f gnomad..r2.1.1.extract.tsv.gz\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## gnomAD genomes v3.0\n\nOriginal gnomAD genomes v3.0 is downloaded on October 17, 2020\nfrom https://gnomad.broadinstitute.org/.\n\ntabix -s 1 -b 2 -e 2 -f gnomad.genomes.r3.0.extract.tsv.gz\n', 'labels': {'reference_genome': 'hg38/genomes/GRCh38-hg38'}}

{'description': '## Liftover Chain Hg19 to Hg38\n', 'labels': None}

N/A