phastConst100way

This file is from:

http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons100way/README.txt

This score contains compressed phastCons scores for multiple alignments of 99 vertebrate genomes to the human genome.

For a description of the phastCons fixed step wiggle data file format, see: http://genome.ucsc.edu/goldenPath/help/phastCons.html

Assemblies used in these alignments:

== Primate subset == Human Homo sapiens Dec 2013 GRCh38/hg38 Reference species Chimp Pan troglodytes Feb 2011 CSAC 2.1.4/panTro4 Syntenic net
Gorilla Gorilla gorilla gorilla May 2011 gorGor3.1/gorGor3 Reciprocal best net Orangutan Pongo pygmaeus abelii July 2007 WUGSC 2.0.2/ponAbe2 Reciprocal best net Gibbon Nomascus leucogenys Oct 2012 GGSC Nleu3.0/nomLeu3 Syntenic net
Rhesus Macaca mulatta Oct 2010 BGI CR1.0/rheMac3 Syntenic net
Crab-eating macaque Macaca fascicularis Jun 2013 Macacafascicularis5.0/macFas5 Syntenic net
Baboon Papio hamadryas Mar 2012 Baylor Panu2.0/papAnu2 Reciprocal best net Green monkey Chlorocebus sabaeus Mar 2014 Chlorocebus_sabeus 1.1/chlSab2 Syntenic net
Marmoset Callithrix jacchus Mar 2009 WUGSC 3.2/calJac3 Syntenic net
Squirrel monkey Saimiri boliviensis Oct 2011 Broad/saiBol1 Syntenic net
Bushbaby Otolemur garnettii Mar 2011 Broad/otoGar3 Syntenic net

== Euarchontoglires subset == Chinese tree shrew Tupaia chinensis Jan 2013 TupChi1.0/tupChi1 Syntenic net
Squirrel Spermophilus tridecemlineatus Nov 2011 Broad/speTri2 Syntenic net
Lesser Egyptian jerboa Jaculus jaculus May 2012 JacJac1.0/jacJac1 Syntenic net
Prairie vole Microtus ochrogaster Oct 2012 MicOch1.0/micOch1 Syntenic net
Chinese hamster Cricetulus griseus Jul 2013 Cgriseusv1.0/criGri1 Syntenic net
Golden hamster Mesocricetus auratus Mar 2013 MesAur1.0/mesAur1 Syntenic net
Mouse Mus musculus Dec 2011 GRCm38/mm10 Syntenic net
Rat Rattus norvegicus Jul 2014 RGSC 6.0/rn6 Syntenic net
Naked mole-rat Heterocephalus glaber Jan 2012 Broad HetGlafemale_1.0/hetGla2 Syntenic net
Guinea pig Cavia porcellus Feb 2008 Broad/cavPor3 Syntenic net
Chinchilla Chinchilla lanigera May 2012 ChiLan1.0/chiLan1 Syntenic net
Brush-tailed rat Octodon degus Apr 2012 OctDeg1.0/octDeg1 Syntenic net
Rabbit Oryctolagus cuniculus Apr 2009 Broad/oryCun2 Syntenic net
Pika Ochotona princeps May 2012 OchPri3.0/ochPri3 Syntenic net

== Laurasiatheria subset == Pig Sus scrofa Aug 2011 SGSC Sscrofa10.2/susScr3 Syntenic net
Alpaca Vicugna pacos Mar 2013 Vicugnapacos-2.0.1/vicPac2 Syntenic net
Bactrian camel Camelus ferus Dec 2011 CB1/camFer1 Syntenic net
Dolphin Tursiops truncatus Oct 2011 Baylor Ttru1.4/turTru2 Reciprocal best net Killer whale Orcinus orca Jan 2013 Oorc1.1/orcOrc1 Syntenic net
Tibetan antelope Pantholops hodgsonii May 2013 PHO1.0/panHod1 Syntenic net
Cow Bos taurus Jun 2014 UMD3.1.1/bosTau8 Syntenic net
Sheep Ovis aries Aug 2012 ISGC Oarv3.1/oviAri3 Syntenic net
Domestic goat Capra hircus May 2012 CHIR1.0/capHir1 Syntenic net
Horse Equus caballus Sep 2007 Broad/equCab2 Syntenic net
White rhinoceros Ceratotherium simum May 2012 CerSimSim1.0/cerSim1 Syntenic net
Cat Felis catus Nov 2014 ICGSC Feliscatus 8.0/felCat8 Syntenic net
Dog Canis lupus familiaris Sep 2011 Broad CanFam3.1/canFam3 Syntenic net
Ferret Mustela putorius furo Apr 2011 MusPutFur1.0/musFur1 Syntenic net
Panda Ailuropoda melanoleuca Dec 2009 BGI-Shenzhen 1.0/ailMel1 Syntenic net
Pacific walrus Odobenus rosmarus divergens Jan 2013 Oros1.0/odoRosDiv1 Syntenic net
Weddell seal Leptonychotes weddellii Mar 2013 LepWed1.0/lepWed1 Reciprocal best net Black flying-fox Pteropus alecto Aug 2012 ASM32557v1/pteAle1 Syntenic net
Megabat Pteropus vampyrus Jul 2008 Broad/pteVam1 Reciprocal best net David's myotis bat Myotis davidii Aug 2012 ASM32734v1/myoDav1 Syntenic net
Microbat Myotis lucifugus Jul 2010 Broad Institute Myoluc2.0/myoLuc2 Syntenic net
Big brown bat Eptesicus fuscus Jul 2012 EptFus1.0/eptFus1 Syntenic net
Hedgehog Erinaceus europaeus May 2012 EriEur2.0/eriEur2 Syntenic net
Shrew Sorex araneus Aug 2008 Broad/sorAra2 Syntenic net
Star-nosed mole Condylura cristata Mar 2012 ConCri1.0/conCri1 Syntenic net

== Afrotheria subset == Elephant Loxodonta africana Jul 2009 Broad/loxAfr3 Syntenic net
Cape elephant shrew Elephantulus edwardii Aug 2012 EleEdw1.0/eleEdw1 Syntenic net
Manatee Trichechus manatus latirostris Oct 2011 Broad v1.0/triMan1 Syntenic net
Cape golden mole Chrysochloris asiatica Aug 2012 ChrAsi1.0/chrAsi1 Syntenic net
Tenrec Echinops telfairi Nov 2012 Broad/echTel2 Syntenic net
Aardvark Orycteropus afer afer May 2012 OryAfe1.0/oryAfe1 Syntenic net

== Mammal subset == Armadillo Dasypus novemcinctus Dec 2011 Baylor/dasNov3 Syntenic net
Opossum Monodelphis domestica Oct 2006 Broad/monDom5 Net
Tasmanian devil Sarcophilus harrisii Feb 2011 WTSI Devilref v7.0/sarHar1 Net
Wallaby Macropus eugenii Sep 2009 TWGS Meug1.1/macEug2 Reciprocal best net Platypus Ornithorhynchus anatinus Mar 2007 WUGSC 5.0.1/ornAna1 Reciprocal best net

== Aves subset == Saker falcon Falco cherrug Feb 2013 Fcherrugv1.0/falChe1 Net
Peregrine falcon Falco peregrinus Feb 2013 Fperegrinusv1.0/falPer1 Net
Collared flycatcher Ficedula albicollis Jun 2013 FicAlb1.5/ficAlb2 Net
White-throated sparrow Zonotrichia albicollis Apr 2013 ASM38545v1/zonAlb1 Net
Medium ground finch Geospiza fortis Apr 2012 GeoFor1.0/geoFor1 Net
Zebra finch Taeniopygia guttata Feb 2013 WashU taeGut324/taeGut2 Net
Tibetan ground jay Pseudopodoces humilis Jan 2013 PseHum1.0/pseHum1 Net
Budgerigar Melopsittacus undulatus Sep 2011 WUSTL v6.3/melUnd1 Net
Parrot Amazona vittata Jan 2013 AV1/amaVit1 Net
Scarlet macaw Ara macao Jun 2013 SMACv1.1/araMac1 Net
Rock pigeon Columba livia Feb 2013 Cliv1.0/colLiv1 Net
Mallard duck Anas platyrhynchos Apr 2013 BGIduck1.0/anaPla1 Net
Chicken Gallus gallus Nov 2011 ICGSC Gallusgallus-4.0/galGal4 Net
Turkey Meleagris gallopavo Dec 2009 TGC Turkey2.01/melGal1 Net

== Sarcopterygii subset == American alligator Alligator mississippiensis Aug 2012 allMis0.2/allMis1 Net
Green seaturtle Chelonia mydas Mar 2013 CheMyd1.0/cheMyd1 Net
Painted turtle Chrysemys picta bellii Mar 2014 v3.0.3/chrPic2 Net
Chinese softshell turtle Pelodiscus sinensis Oct 2011 PelSin1.0/pelSin1 Net
Spiny softshell turtle Apalone spinifera May 2013 ASM38561v1/apaSpi1 Net
Lizard Anolis carolinensis May 2010 Broad AnoCar2.0/anoCar2 Net
X. tropicalis Xenopus tropicalis Sep 2012 JGI 7.0/xenTro7 Net
Coelacanth Latimeria chalumnae Aug 2011 Broad/latCha1 Net

== Fish subset == Tetraodon Tetraodon nigroviridis Mar 2007 Genoscope 8.0/tetNig2 Net
Fugu Takifugu rubripes Oct 2011 FUGU5/fr3 Net
Yellowbelly pufferfish Takifugu flavidus May 2013 version 1 of Takifugu flavidus genome/takFla1 Net
Nile tilapia Oreochromis niloticus Jan 2011 Broad oreNil1.1/oreNil2 Net
Princess of Burundi Neolamprologus brichardi May 2011 NeoBri1.0/neoBri1 Net
Burton's mouthbreeder Haplochromis burtoni Oct 2011 AstBur1.0/hapBur1 Net
Zebra mbuna Maylandia zebra Mar 2012 MetZeb1.1/mayZeb1 Net
Pundamilia nyererei Pundamilia nyererei Oct 2011 PunNye1.0/punNye1 Net
Medaka Oryzias latipes Oct 2005 NIG/UT MEDAKA1/oryLat2 Net
Southern platyfish Xiphophorus maculatus Jan 2012 Xiphophorusmaculatus-4.4.2/xipMac1 Net
Stickleback Gasterosteus aculeatus Feb 2006 Broad/gasAcu1 Net
Atlantic cod Gadus morhua May 2010 Genofisk GadMorMay2010/gadMor1 Net
Zebrafish Danio rerio Sep 2014 Zv10/danRer10 Net
Mexican tetra (cavefish) Astyanax mexicanus Apr 2013 Astyanax_mexicanus-1.0.2/astMex1 Net
Spotted gar Lepisosteus oculatus Dec 2011 LepOcu1/lepOcu1 Net
Lamprey Petromyzon marinus Sep 2010 WUGSC 7.0/petMar2 Net

• reference_genome: hg38/genomes/GRCh38-hg38