Resource

Id:hg38/scores/phyloP30way
Type:position_score
Summary: phyloP (phylogenetic p-values) conservation score based on the multiple alignments of 29 genome sequences to the human genome. The higher the more conservative. Scores range from -20.000 to 1.312.
Description:

phyloP30way

Dowloaded long time ago from USCS genome browser by Adriana. Need to be updated.

This resource contains conservation scoring by phyloP (phylogenetic p-values) from the PHAST package (http://compgen.cshl.edu/phast/) for multiple alignments of 29 genome sequences to the human genome.

The phastCons data can be found at: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons30way/

The multiple alignments and methods description are at: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/multiz30way/

For more information about this data, see the track description for the Conservation track: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg38&g=cons30way

Labels:
  • reference_genome: hg38/genomes/GRCh38-hg38

Scores

id type default annotation description histogram range
phyloP30way float

phylop30way

The scores is a number that reflects the conservation at a position. HISTOGRAM FOR phyloP30way [-20.000, 1.312]

Files

Filename Size md5
genomic_resource.yaml 1.73 KB ffd393deb1a1829418490176d205df0b
phyloP30way.bedGraph.gz 14.72 GB 45cec64152ff397a5365cb79a36172e3
phyloP30way.bedGraph.gz.dvc 98.0 B b7b8bc66f0531fe406712671fcdc9c58
phyloP30way.bedGraph.gz.tbi 2.8 MB 555464cc7ae478267cee3c7d2215a7a1
phyloP30way.bedGraph.gz.tbi.dvc 98.0 B db2d35587e00e10463ce5baa8fbad2c4
statistics/