Id: | hg38/scores/phyloP30way |
Type: | position_score |
Summary: | phyloP (phylogenetic p-values) conservation score based on the multiple alignments of 29 genome sequences to the human genome. The higher the more conservative. Scores range from -20.000 to 1.312. |
Description: | phyloP30wayDowloaded long time ago from USCS genome browser by Adriana. Need to be updated. This resource contains conservation scoring by phyloP (phylogenetic p-values) from the PHAST package (http://compgen.cshl.edu/phast/) for multiple alignments of 29 genome sequences to the human genome. The phastCons data can be found at: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons30way/ The multiple alignments and methods description are at: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/multiz30way/ For more information about this data, see the track description for the Conservation track: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg38&g=cons30way |
Labels: |
|
id | type | default annotation | description | histogram | range |
---|---|---|---|---|---|
phyloP30way | float |
phylop30way |
The scores is a number that reflects the conservation at a position. | [-20.000, 1.312] |
Filename | Size | md5 |
---|---|---|
genomic_resource.yaml | 1.73 KB | ffd393deb1a1829418490176d205df0b |
phyloP30way.bedGraph.gz | 14.72 GB | 45cec64152ff397a5365cb79a36172e3 |
phyloP30way.bedGraph.gz.dvc | 98.0 B | b7b8bc66f0531fe406712671fcdc9c58 |
phyloP30way.bedGraph.gz.tbi | 2.8 MB | 555464cc7ae478267cee3c7d2215a7a1 |
phyloP30way.bedGraph.gz.tbi.dvc | 98.0 B | db2d35587e00e10463ce5baa8fbad2c4 |
statistics/ |