| Id: | hg38/variant_frequencies/gnomAD_v2.1.1_liftover/genomes |
| Type: | allele_score |
| Summary: | ## gnomAD genomes v2.1.1 liftover Original gnomAD genomes v2.1.1 liftover is downloaded on October 19, 2020 from https://gnomad.broadinstitute.org/. tabix -s 1 -b 2 -e 2 -f gnomad..r2.1.1.extract.tsv.gz |
| Description: | gnomAD genomes v2.1.1 liftoverOriginal gnomAD genomes v2.1.1 liftover is downloaded on October 19, 2020 from https://gnomad.broadinstitute.org/. tabix -s 1 -b 2 -e 2 -f gnomad..r2.1.1.extract.tsv.gz |
| Labels: |
|
| id | type | default annotation | description | histogram | range |
|---|---|---|---|---|---|
| ID | str |
None |
gnomAD v2.1.1 liftover genomes variant ID | NO HISTOGRAM | NO DOMAIN |
| AC | int |
genome_gnomad_v2_1_1_ac |
Alternative allele count in the whole gnomAD genome samples v2.1.1 |
 |
[0.000, 31416.000] |
| AN | int |
genome_gnomad_v2_1_1_an |
Total allele count in the whole gnomAD genome samples v2.1.1 |
 |
[0.000, 31416.000] |
| AF | float |
genome_gnomad_v2_1_1_af |
Alternative allele frequency in the whole gnomAD genome samples v2.1.1 |
 |
[0.000, 1.000] |
| AF_percent | float |
genome_gnomad_v2_1_1_af_percent |
Alternative allele frequency in the whole gnomAD genome samples v2.1.1 as % |
 |
[0.000, 100.000] |
| controls_AC | int |
genome_gnomad_v2_1_1_controls_ac |
Alternative allele count in the controls subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 10884.000] |
| controls_AN | int |
genome_gnomad_v2_1_1_controls_an |
gnomAD v2.1.1 liftover genome count of genotyped individuals in control group |
 |
[0.000, 10884.000] |
| controls_AF | float |
None |
Alternative allele frequency in the controls subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 1.000] |
| controls_AF_percent | float |
genome_gnomad_v2_1_1_controls_af_percent |
Alternative allele frequency in the controls subset of whole gnomAD genome samples v2.1.1 as % |
 |
[0.000, 100.000] |
| non_neuro_AC | int |
genome_gnomad_v2_1_1_non_neuro_ac |
Alternative allele count in the non-neuro subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 21272.000] |
| non_neuro_AN | int |
genome_gnomad_v2_1_1_non_neuro_an |
Total allele count in the non-neuro subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 21272.000] |
| non_neuro_AF | float |
None |
Alternative allele frequency in the non-neuro subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 1.000] |
| non_neuro_AF_percent | float |
genome_gnomad_v2_1_1_non_neuro_af_percent |
Alternative allele frequency in the non-neuro subset of whole gnomAD genome samples v2.1.1 as % |
 |
[0.000, 100.000] |
| Filename | Size | md5 |
|---|---|---|
| combine_result.sh | 474.0 B | fa851daf7398367cb2d9f5a1a5b4a503 |
| extract_info.sh | 424.0 B | cf68020206b293f498e582ad7fc47086 |
| genomic_resource.yaml | 4.98 KB | 05ed217a2f05367e77a96fabea7197b1 |
| gnomad.genomes.r2.1.1.extract.tsv.gz | 11.52 GB | ca9bac763bd3b6ad7f7b6410ac2846c2 |
| gnomad.genomes.r2.1.1.extract.tsv.gz.dvc | 111.0 B | 3b37322351fd26702b69f6403307904d |
| gnomad.genomes.r2.1.1.extract.tsv.gz.tbi | 2.56 MB | c50b22d0e97b437426e3990ab2bb2dad |
| gnomad.genomes.r2.1.1.extract.tsv.gz.tbi.dvc | 111.0 B | 24469a576e89e82d03c2020d920f989c |
| hists/genome_gnomad_v2_1_1_af_percent | 2.8 KB | 1d048123f42ccf1a078863373184cdd0 |
| hists/genome_gnomad_v2_1_1_af_percent.hist.toml | 163.0 B | c11fd0ed93eea3cf4d3c411d8ec991d4 |
| statistics/ |