Resource

Id: hg38/variant_frequencies/gnomAD_v2.1.1_liftover/genomes
Type: allele_score
Version: 0
Summary:
Description:
Labels:
  • reference_genome: hg38/genomes/GRCh38-hg38

Scores

ID Type Default annotation Description Histogram Range
ID str

None
gnomAD v2.1.1 liftover genomes variant ID
 NO HISTOGRAM NO DOMAIN
AC int

genome_gnomad_v2_1_1_ac
Alternative allele count in the whole gnomAD genome samples v2.1.1
 HISTOGRAM FOR AC [0.000, 31416.000]
AN int

genome_gnomad_v2_1_1_an
Total allele count in the whole gnomAD genome samples v2.1.1
 HISTOGRAM FOR AN [0.000, 31416.000]
AF float

genome_gnomad_v2_1_1_af
Alternative allele frequency in the whole gnomAD genome samples v2.1.1
 HISTOGRAM FOR AF [0.000, 1.000]
AF_percent float

genome_gnomad_v2_1_1_af_percent
Alternative allele frequency in the whole gnomAD genome samples v2.1.1 as %
 HISTOGRAM FOR AF_percent [0.000, 100.000]
controls_AC int

genome_gnomad_v2_1_1_controls_ac
Alternative allele count in the controls subset of whole gnomAD genome samples v2.1.1
 HISTOGRAM FOR controls_AC [0.000, 10884.000]
controls_AN int

genome_gnomad_v2_1_1_controls_an
gnomAD v2.1.1 liftover genome count of genotyped individuals in control group
 HISTOGRAM FOR controls_AN [0.000, 10884.000]
controls_AF float

None
Alternative allele frequency in the controls subset of whole gnomAD genome samples v2.1.1
 HISTOGRAM FOR controls_AF [0.000, 1.000]
controls_AF_percent float

genome_gnomad_v2_1_1_controls_af_percent
Alternative allele frequency in the controls subset of whole gnomAD genome samples v2.1.1 as %
 HISTOGRAM FOR controls_AF_percent [0.000, 100.000]
non_neuro_AC int

genome_gnomad_v2_1_1_non_neuro_ac
Alternative allele count in the non-neuro subset of whole gnomAD genome samples v2.1.1
 HISTOGRAM FOR non_neuro_AC [0.000, 21272.000]
non_neuro_AN int

genome_gnomad_v2_1_1_non_neuro_an
Total allele count in the non-neuro subset of whole gnomAD genome samples v2.1.1
 HISTOGRAM FOR non_neuro_AN [0.000, 21272.000]
non_neuro_AF float

None
Alternative allele frequency in the non-neuro subset of whole gnomAD genome samples v2.1.1
 HISTOGRAM FOR non_neuro_AF [0.000, 1.000]
non_neuro_AF_percent float

genome_gnomad_v2_1_1_non_neuro_af_percent
Alternative allele frequency in the non-neuro subset of whole gnomAD genome samples v2.1.1 as %
 HISTOGRAM FOR non_neuro_AF_percent [0.000, 100.000]

Files

Filename Size md5
combine_result.sh 474.0 B fa851daf7398367cb2d9f5a1a5b4a503
extract_info.sh 424.0 B cf68020206b293f498e582ad7fc47086
genomic_resource.yaml 5.04 KB cc8f4bb3c18a45c903912dd29b30c3a2
gnomad.genomes.r2.1.1.extract.tsv.gz 11.52 GB ca9bac763bd3b6ad7f7b6410ac2846c2
gnomad.genomes.r2.1.1.extract.tsv.gz.dvc 111.0 B 3b37322351fd26702b69f6403307904d
gnomad.genomes.r2.1.1.extract.tsv.gz.tbi 2.56 MB c50b22d0e97b437426e3990ab2bb2dad
gnomad.genomes.r2.1.1.extract.tsv.gz.tbi.dvc 111.0 B 24469a576e89e82d03c2020d920f989c
hists/genome_gnomad_v2_1_1_af_percent 2.8 KB 1d048123f42ccf1a078863373184cdd0
hists/genome_gnomad_v2_1_1_af_percent.hist.toml 163.0 B c11fd0ed93eea3cf4d3c411d8ec991d4
statistics/