Resource

Id:hg19/scores/phyloP46_primates
Type:position_score
Summary: phyloP (phylogenetic p-values) conservation score based on the multiple alignments of the primate species in the phyloP46way alignment. The higher the more conservative.
Description:

phyloP46way placentals

This file is from:

http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP46way/README.txt

This directory contains conservation scoring by phyloP (phylogenetic p-values) from the PHAST package (http://compgen.bscb.cornell.edu/phast/) for multiple alignments of 45 vertebrate genomes to the human genome, plus alternate sets of scores for the primate species and the placental mammal species in the alignments.
Labels:
  • reference_genome: hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174

Scores

id type default annotation description histogram range
phyloP46_primates float

phylop46_primates

 The scores is a number that reflects the conservation at a position. HISTOGRAM FOR phyloP46_primates [-9.065, 0.655]

Files

Filename Size md5
genomic_resource.yaml 1.36 KB 7eaeb2d4c7c39ba6e9118242f48c3360
phyloP46_primates.bedGraph.gz 10.81 GB 555dc78eb5711a1c06b05a4d573ef05b
phyloP46_primates.bedGraph.gz.dvc 104.0 B 18a9b7ef7b27f90dd2e5c753996947e1
phyloP46_primates.bedGraph.gz.tbi 2.83 MB 4be89558babe1c9e5b60c362adc28894
phyloP46_primates.bedGraph.gz.tbi.dvc 104.0 B 718e29e476ff6756a68692363443238b
statistics/