Resource

Id:hg38/scores/phyloP20way
Type:position_score
Summary: phyloP (phylogenetic p-values) conservation score based on the multiple alignments of 19 genome sequences to the human genome. The higher the more conservative. Scores range from from -14.191 to 1.199.
Description:

phyloP20way

Dowloaded long time ago from USCS genome browser by Adriana. Need to be updated.

This resource contains conservation scoring by phyloP (phylogenetic p-values) from the PHAST package (http://compgen.cshl.edu/phast/) for multiple alignments of 19 genome sequences to the human genome.

The phastCons data can be found at: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons20way/

The multiple alignments and methods description are at: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/multiz20way/

For more information about this data, see the track description for the Conservation track: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg38&g=cons20way

Labels:
  • reference_genome: hg38/genomes/GRCh38-hg38

Scores

id type default annotation description histogram range
phyloP20way float

phylop20way

The scores is a number that reflects the conservation at a position. HISTOGRAM FOR phyloP20way [-14.191, 1.199]

Files

Filename Size md5
genomic_resource.yaml 1.74 KB 3519cba435df65e49e52e56a95349804
phyloP20way.bedGraph.gz 14.56 GB f4f496612d4707acc21c6e4a55223b26
phyloP20way.bedGraph.gz.dvc 98.0 B fa0f838f5b39816bc71438d2883ccb70
phyloP20way.bedGraph.gz.tbi 2.92 MB 97861b4f4b639539415bc043254cc622
phyloP20way.bedGraph.gz.tbi.dvc 98.0 B 932b3155326d114b20583dc80692b896
statistics/