Resource

Id:hg19/scores/phastCons46_vertebrates
Type:position_score
Summary: phastCons46_vertebrates is a conservation score based on a multiple alignments of 45 vertebrate genomes to the human genome. The larger the score, the more conserved the site. Scores range from 0 to 1.
Description:

phastCons46way vertebrates

This score is from:

http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phastCons46way/README.txt

This resource contains phastCons scores for multiple alignments of 45 vertebrate genomes to the human genome, plus an alternate set of scores for the primates subset of species in the alignments, and an alternate set of scores for the placental mammal subset of species in the alignments.

The multiple alignments and methods description are at: http://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/

Labels:
  • reference_genome: hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174

Scores

id type default annotation description histogram range
phastCons46_vertebrates float

phastcons46_vertebrates

The scores is a number that reflects the conservation at a position. HISTOGRAM FOR phastCons46_vertebrates [0.000, 1.000]

Files

Filename Size md5
genomic_resource.yaml 1.57 KB d000f34e236ebb145f55544bc63b4cd3
phastCons46_vertebrates.bedGraph.gz 10.81 GB 0df8db60c5453d7943fee7998d09915b
phastCons46_vertebrates.bedGraph.gz.dvc 110.0 B 5e0c940ae0626dcee05ce321b326bf06
phastCons46_vertebrates.bedGraph.gz.tbi 2.48 MB 5e881d15996e67c3fbe08fba7dacddcb
phastCons46_vertebrates.bedGraph.gz.tbi.dvc 110.0 B 3d5c38a7ac8f3bfe66257681a321b725
statistics/