Resource

Id:hg38/gene_models/refSeq_v20200330
Type:gene_models
Summary: ## refSeq gene models for HG38 from 2020-03 Default gene models used by GPF for HG38.
Description:

refSeq gene models for HG38 from 2020-03

Default gene models used by GPF for HG38.

Labels:
  • reference_genome: hg38/genomes/GRCh38-hg38

Configuration

Gene models file:

refSeq_20200330.txt.gz

Format: refseq

Statistics

transcript number 85561
protein coding transcript number 64686
gene number 28281
protein coding gene number 19433
chromosome number 367
chr1 transcript numbers 7438
chr2 transcript numbers 5361
chr3 transcript numbers 4544
chr4 transcript numbers 2848
chr5 transcript numbers 3425
chr6 transcript numbers 3826
chr7 transcript numbers 3810
chr8 transcript numbers 2879
chr9 transcript numbers 2971
chrM transcript numbers 1
chrX transcript numbers 2897
chrY transcript numbers 458
chr10 transcript numbers 3514
chr11 transcript numbers 4533
chr12 transcript numbers 3684
chr13 transcript numbers 1414
chr14 transcript numbers 2318
chr15 transcript numbers 2505
chr16 transcript numbers 3011
chr17 transcript numbers 3808
chr18 transcript numbers 1207
chr19 transcript numbers 4317
chr20 transcript numbers 1889
chr21 transcript numbers 1036
chr22 transcript numbers 1602
chrUn_GL000195v1 transcript numbers 5
chrUn_GL000213v1 transcript numbers 4
chrUn_GL000218v1 transcript numbers 3
chrUn_GL000219v1 transcript numbers 1
chrUn_GL000220v1 transcript numbers 37
chrUn_GL000224v1 transcript numbers 1
chrUn_KI270741v1 transcript numbers 2
chrUn_KI270753v1 transcript numbers 1
chr1_GL383518v1_alt transcript numbers 7
chr1_GL383519v1_alt transcript numbers 26
chr1_GL383520v2_alt transcript numbers 10
chr1_KI270759v1_alt transcript numbers 1
chr1_KI270761v1_alt transcript numbers 7
chr1_KI270762v1_alt transcript numbers 19
chr1_KI270763v1_alt transcript numbers 15
chr1_KI270765v1_alt transcript numbers 6
chr1_KI270766v1_alt transcript numbers 27
chr1_KI270892v1_alt transcript numbers 7
chr1_KN196472v1_fix transcript numbers 2
chr1_KN196473v1_fix transcript numbers 4
chr1_KN196474v1_fix transcript numbers 6
chr1_KN538360v1_fix transcript numbers 10
chr1_KN538361v1_fix transcript numbers 8
chr1_KQ031383v1_fix transcript numbers 30
chr1_KQ458383v1_alt transcript numbers 19
chr1_KQ458384v1_alt transcript numbers 9
chr1_KQ983255v1_alt transcript numbers 28
chr1_KV880763v1_alt transcript numbers 6
chr1_KZ208904v1_alt transcript numbers 8
chr1_KZ208906v1_fix transcript numbers 173
chr2_GL383521v1_alt transcript numbers 1
chr2_GL383522v1_alt transcript numbers 8
chr2_GL582966v2_alt transcript numbers 2
chr2_KI270767v1_alt transcript numbers 7
chr2_KI270768v1_alt transcript numbers 8
chr2_KI270769v1_alt transcript numbers 4
chr2_KI270770v1_alt transcript numbers 2
chr2_KI270773v1_alt transcript numbers 1
chr2_KI270774v1_alt transcript numbers 6
chr2_KI270776v1_alt transcript numbers 12
chr2_KI270893v1_alt transcript numbers 7
chr2_KN538362v1_fix transcript numbers 1
chr2_KN538363v1_fix transcript numbers 11
chr2_KQ983256v1_alt transcript numbers 22
chr2_KZ208908v1_alt transcript numbers 3
chr3_GL383526v1_alt transcript numbers 4
chr3_JH636055v2_alt transcript numbers 15
chr3_KI270777v1_alt transcript numbers 5
chr3_KI270779v1_alt transcript numbers 13
chr3_KI270780v1_alt transcript numbers 4
chr3_KI270781v1_alt transcript numbers 2
chr3_KI270782v1_alt transcript numbers 4
chr3_KI270783v1_alt transcript numbers 1
chr3_KI270784v1_alt transcript numbers 2
chr3_KI270895v1_alt transcript numbers 13
chr3_KI270924v1_alt transcript numbers 13
chr3_KI270934v1_alt transcript numbers 13
chr3_KI270935v1_alt transcript numbers 13
chr3_KI270936v1_alt transcript numbers 13
chr3_KI270937v1_alt transcript numbers 13
chr3_KN196475v1_fix transcript numbers 48
chr3_KN538364v1_fix transcript numbers 2
chr3_KQ031385v1_fix transcript numbers 13
chr3_KV766192v1_fix transcript numbers 3
chr3_KZ208909v1_alt transcript numbers 1
chr3_KZ559101v1_alt transcript numbers 2
chr3_KZ559102v1_alt transcript numbers 1
chr3_KZ559103v1_alt transcript numbers 2
chr3_KZ559104v1_fix transcript numbers 1
chr3_KZ559105v1_alt transcript numbers 9
chr4_GL000257v2_alt transcript numbers 14
chr4_GL383527v1_alt transcript numbers 3
chr4_KI270786v1_alt transcript numbers 3
chr4_KI270789v1_alt transcript numbers 1
chr4_KI270790v1_alt transcript numbers 1
chr4_KI270896v1_alt transcript numbers 9
chr4_KI270925v1_alt transcript numbers 4
chr4_KQ090013v1_alt transcript numbers 8
chr4_KQ090015v1_alt transcript numbers 8
chr4_KQ983257v1_fix transcript numbers 12
chr4_KQ983258v1_alt transcript numbers 12
chr4_KV766193v1_alt transcript numbers 2
chr5_GL339449v2_alt transcript numbers 121
chr5_GL949742v1_alt transcript numbers 2
chr5_KI270791v1_alt transcript numbers 4
chr5_KI270792v1_alt transcript numbers 6
chr5_KI270793v1_alt transcript numbers 2
chr5_KI270794v1_alt transcript numbers 5
chr5_KI270795v1_alt transcript numbers 3
chr5_KI270796v1_alt transcript numbers 1
chr5_KI270897v1_alt transcript numbers 71
chr5_KI270898v1_alt transcript numbers 3
chr5_KV575243v1_alt transcript numbers 15
chr5_KV575244v1_fix transcript numbers 73
chr6_GL000250v2_alt transcript numbers 258
chr6_GL000251v2_alt transcript numbers 516
chr6_GL000252v2_alt transcript numbers 472
chr6_GL000253v2_alt transcript numbers 420
chr6_GL000254v2_alt transcript numbers 453
chr6_GL000255v2_alt transcript numbers 494
chr6_GL000256v2_alt transcript numbers 432
chr6_KI270758v1_alt transcript numbers 4
chr6_KI270797v1_alt transcript numbers 8
chr6_KI270798v1_alt transcript numbers 7
chr6_KI270799v1_alt transcript numbers 1
chr6_KI270800v1_alt transcript numbers 1
chr6_KI270801v1_alt transcript numbers 11
chr6_KI270802v1_alt transcript numbers 1
chr6_KQ090016v1_fix transcript numbers 5
chr6_KV766194v1_fix transcript numbers 6
chr6_KZ208911v1_fix transcript numbers 13
chr7_GL383534v2_alt transcript numbers 11
chr7_KI270803v1_alt transcript numbers 25
chr7_KI270804v1_alt transcript numbers 5
chr7_KI270806v1_alt transcript numbers 11
chr7_KI270808v1_alt transcript numbers 1
chr7_KI270809v1_alt transcript numbers 12
chr7_KI270899v1_alt transcript numbers 5
chr7_KQ031388v1_fix transcript numbers 2
chr7_KV880764v1_fix transcript numbers 1
chr7_KV880765v1_fix transcript numbers 43
chr7_KZ208912v1_fix transcript numbers 33
chr7_KZ208913v1_alt transcript numbers 51
chr8_KI270810v1_alt transcript numbers 1
chr8_KI270811v1_alt transcript numbers 2
chr8_KI270812v1_alt transcript numbers 2
chr8_KI270813v1_alt transcript numbers 43
chr8_KI270814v1_alt transcript numbers 3
chr8_KI270815v1_alt transcript numbers 1
chr8_KI270816v1_alt transcript numbers 62
chr8_KI270817v1_alt transcript numbers 11
chr8_KI270818v1_alt transcript numbers 2
chr8_KI270819v1_alt transcript numbers 8
chr8_KI270820v1_alt transcript numbers 1
chr8_KI270821v1_alt transcript numbers 13
chr8_KI270822v1_alt transcript numbers 15
chr8_KI270900v1_alt transcript numbers 2
chr8_KI270926v1_alt transcript numbers 6
chr8_KZ208914v1_fix transcript numbers 31
chr8_KZ208915v1_fix transcript numbers 231
chr8_KZ559107v1_alt transcript numbers 1
chr9_GL383540v1_alt transcript numbers 1
chr9_GL383541v1_alt transcript numbers 4
chr9_KI270823v1_alt transcript numbers 5
chr9_KN196479v1_fix transcript numbers 44
chrX_KI270880v1_alt transcript numbers 3
chrX_KI270881v1_alt transcript numbers 4
chrX_KI270913v1_alt transcript numbers 1
chrY_KZ208924v1_fix transcript numbers 1
chr10_GL383545v1_alt transcript numbers 2
chr10_GL383546v1_alt transcript numbers 10
chr10_KI270825v1_alt transcript numbers 2
chr10_KN196480v1_fix transcript numbers 19
chr10_KQ090020v1_alt transcript numbers 1
chr10_KQ090021v1_fix transcript numbers 5
chr11_JH159136v1_alt transcript numbers 10
chr11_JH159137v1_alt transcript numbers 4
chr11_KI270827v1_alt transcript numbers 1
chr11_KI270829v1_alt transcript numbers 7
chr11_KI270830v1_alt transcript numbers 13
chr11_KI270831v1_alt transcript numbers 37
chr11_KI270832v1_alt transcript numbers 42
chr11_KI270902v1_alt transcript numbers 5
chr11_KI270903v1_alt transcript numbers 13
chr11_KI270927v1_alt transcript numbers 7
chr11_KN196481v1_fix transcript numbers 23
chr11_KN538368v1_alt transcript numbers 7
chr11_KQ759759v1_fix transcript numbers 4
chr11_KV766195v1_fix transcript numbers 3
chr11_KZ559108v1_fix transcript numbers 1
chr11_KZ559109v1_fix transcript numbers 30
chr11_KZ559110v1_alt transcript numbers 4
chr11_KZ559111v1_alt transcript numbers 6
chr12_GL383550v2_alt transcript numbers 6
chr12_GL383551v1_alt transcript numbers 1
chr12_GL383553v2_alt transcript numbers 5
chr12_GL877875v1_alt transcript numbers 6
chr12_GL877876v1_alt transcript numbers 23
chr12_KI270833v1_alt transcript numbers 2
chr12_KI270834v1_alt transcript numbers 8
chr12_KI270835v1_alt transcript numbers 5
chr12_KI270837v1_alt transcript numbers 3
chr12_KI270904v1_alt transcript numbers 29
chr12_KN538369v1_fix transcript numbers 17
chr12_KN538370v1_fix transcript numbers 4
chr12_KZ208916v1_fix transcript numbers 41
chr12_KZ208917v1_fix transcript numbers 4
chr13_KI270838v1_alt transcript numbers 7
chr13_KI270840v1_alt transcript numbers 2
chr13_KI270842v1_alt transcript numbers 2
chr13_KN538371v1_fix transcript numbers 4
chr13_KN538372v1_fix transcript numbers 4
chr13_KN538373v1_fix transcript numbers 1
chr14_KI270844v1_alt transcript numbers 5
chr14_KI270845v1_alt transcript numbers 5
chr14_KI270846v1_alt transcript numbers 17
chr14_KI270847v1_alt transcript numbers 75
chr14_KZ208919v1_alt transcript numbers 1
chr14_KZ208920v1_fix transcript numbers 114
chr15_GL383554v1_alt transcript numbers 29
chr15_GL383555v2_alt transcript numbers 2
chr15_KI270848v1_alt transcript numbers 38
chr15_KI270849v1_alt transcript numbers 10
chr15_KI270850v1_alt transcript numbers 36
chr15_KI270851v1_alt transcript numbers 24
chr15_KI270852v1_alt transcript numbers 24
chr15_KI270905v1_alt transcript numbers 148
chr15_KI270906v1_alt transcript numbers 18
chr15_KN538374v1_fix transcript numbers 156
chr15_KQ031389v1_alt transcript numbers 53
chr16_GL383556v1_alt transcript numbers 6
chr16_GL383557v1_alt transcript numbers 2
chr16_KI270853v1_alt transcript numbers 137
chr16_KI270854v1_alt transcript numbers 5
chr16_KI270855v1_alt transcript numbers 33
chr16_KI270856v1_alt transcript numbers 3
chr16_KQ090026v1_alt transcript numbers 8
chr16_KQ090027v1_alt transcript numbers 12
chr16_KV880768v1_fix transcript numbers 70
chr16_KZ208921v1_alt transcript numbers 21
chr16_KZ559113v1_fix transcript numbers 2
chr17_GL000258v2_alt transcript numbers 70
chr17_GL383563v3_alt transcript numbers 10
chr17_GL383564v2_alt transcript numbers 9
chr17_GL383566v1_alt transcript numbers 1
chr17_JH159146v1_alt transcript numbers 26
chr17_JH159147v1_alt transcript numbers 9
chr17_JH159148v1_alt transcript numbers 8
chr17_KI270857v1_alt transcript numbers 213
chr17_KI270860v1_alt transcript numbers 8
chr17_KI270861v1_alt transcript numbers 24
chr17_KI270862v1_alt transcript numbers 14
chr17_KI270907v1_alt transcript numbers 5
chr17_KI270908v1_alt transcript numbers 71
chr17_KI270909v1_alt transcript numbers 64
chr17_KI270910v1_alt transcript numbers 9
chr17_KV575245v1_fix transcript numbers 25
chr17_KV766196v1_fix transcript numbers 7
chr17_KV766197v1_alt transcript numbers 1
chr17_KV766198v1_alt transcript numbers 20
chr18_GL383567v1_alt transcript numbers 2
chr18_GL383571v1_alt transcript numbers 1
chr18_GL383572v1_alt transcript numbers 1
chr18_KI270863v1_alt transcript numbers 6
chr18_KI270911v1_alt transcript numbers 1
chr18_KQ090028v1_fix transcript numbers 3
chr18_KQ458385v1_alt transcript numbers 1
chr18_KZ559115v1_fix transcript numbers 1
chr19_GL000209v2_alt transcript numbers 39
chr19_GL383573v1_alt transcript numbers 6
chr19_GL383574v1_alt transcript numbers 2
chr19_GL383575v2_alt transcript numbers 14
chr19_GL383576v1_alt transcript numbers 1
chr19_GL949746v1_alt transcript numbers 152
chr19_GL949747v2_alt transcript numbers 131
chr19_GL949748v2_alt transcript numbers 92
chr19_GL949749v2_alt transcript numbers 88
chr19_GL949750v2_alt transcript numbers 82
chr19_GL949751v2_alt transcript numbers 93
chr19_GL949752v1_alt transcript numbers 175
chr19_GL949753v2_alt transcript numbers 132
chr19_KI270865v1_alt transcript numbers 2
chr19_KI270866v1_alt transcript numbers 2
chr19_KI270867v1_alt transcript numbers 12
chr19_KI270868v1_alt transcript numbers 6
chr19_KI270882v1_alt transcript numbers 41
chr19_KI270883v1_alt transcript numbers 37
chr19_KI270884v1_alt transcript numbers 33
chr19_KI270885v1_alt transcript numbers 39
chr19_KI270886v1_alt transcript numbers 39
chr19_KI270887v1_alt transcript numbers 38
chr19_KI270888v1_alt transcript numbers 33
chr19_KI270889v1_alt transcript numbers 36
chr19_KI270890v1_alt transcript numbers 38
chr19_KI270891v1_alt transcript numbers 36
chr19_KI270914v1_alt transcript numbers 38
chr19_KI270915v1_alt transcript numbers 38
chr19_KI270916v1_alt transcript numbers 39
chr19_KI270917v1_alt transcript numbers 48
chr19_KI270918v1_alt transcript numbers 31
chr19_KI270919v1_alt transcript numbers 39
chr19_KI270920v1_alt transcript numbers 50
chr19_KI270921v1_alt transcript numbers 55
chr19_KI270922v1_alt transcript numbers 49
chr19_KI270923v1_alt transcript numbers 46
chr19_KI270929v1_alt transcript numbers 51
chr19_KI270930v1_alt transcript numbers 39
chr19_KI270931v1_alt transcript numbers 37
chr19_KI270932v1_alt transcript numbers 39
chr19_KI270933v1_alt transcript numbers 38
chr19_KI270938v1_alt transcript numbers 185
chr19_KN196484v1_fix transcript numbers 16
chr19_KQ458386v1_fix transcript numbers 36
chr19_KV575246v1_alt transcript numbers 37
chr19_KV575247v1_alt transcript numbers 38
chr19_KV575248v1_alt transcript numbers 38
chr19_KV575249v1_alt transcript numbers 48
chr19_KV575250v1_alt transcript numbers 50
chr19_KV575251v1_alt transcript numbers 38
chr19_KV575252v1_alt transcript numbers 37
chr19_KV575253v1_alt transcript numbers 39
chr19_KV575254v1_alt transcript numbers 24
chr19_KV575255v1_alt transcript numbers 37
chr19_KV575256v1_alt transcript numbers 44
chr19_KV575257v1_alt transcript numbers 21
chr19_KV575258v1_alt transcript numbers 42
chr19_KV575259v1_alt transcript numbers 38
chr19_KV575260v1_alt transcript numbers 32
chr20_KI270869v1_alt transcript numbers 5
chr20_KI270870v1_alt transcript numbers 10
chr20_KI270871v1_alt transcript numbers 1
chr21_GL383579v2_alt transcript numbers 1
chr21_GL383580v2_alt transcript numbers 5
chr21_GL383581v2_alt transcript numbers 10
chr21_KI270872v1_alt transcript numbers 11
chr21_KI270873v1_alt transcript numbers 3
chr22_GL383582v2_alt transcript numbers 12
chr22_GL383583v2_alt transcript numbers 2
chr22_KB663609v1_alt transcript numbers 14
chr22_KI270875v1_alt transcript numbers 16
chr22_KI270876v1_alt transcript numbers 19
chr22_KI270877v1_alt transcript numbers 5
chr22_KI270878v1_alt transcript numbers 4
chr22_KI270879v1_alt transcript numbers 58
chr22_KI270928v1_alt transcript numbers 19
chr22_KN196485v1_alt transcript numbers 8
chr22_KN196486v1_alt transcript numbers 14
chr22_KQ458387v1_alt transcript numbers 13
chr22_KQ458388v1_alt transcript numbers 17
chr22_KQ759761v1_alt transcript numbers 14
chr22_KQ759762v1_fix transcript numbers 3
chr1_KI270713v1_random transcript numbers 7
chr1_KI270714v1_random transcript numbers 1
chr4_GL000008v2_random transcript numbers 1
chr11_KI270721v1_random transcript numbers 8
chr14_GL000194v1_random transcript numbers 4
chr15_KI270727v1_random transcript numbers 5
chr16_KI270728v1_random transcript numbers 27
chr17_GL000205v2_random transcript numbers 1
chr22_KI270731v1_random transcript numbers 3
chr22_KI270733v1_random transcript numbers 36
chr22_KI270734v1_random transcript numbers 8

Files

Filename Size md5
genomic_resource.yaml 254.0 B 78a7c84f87ea866026dd5678ef5450cf
refSeq_20200330.txt.gz 4.14 MB c4a1ef73fb7e4a29f81c1578f29532c3
refSeq_20200330.txt.gz.dvc 93.0 B 2c9f21bd6b5b8bd4d6db185206a5808b
statistics/