| Id: | hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174 |
| Type: | genome |
| Summary: | ## HG19 Reference Genome Default HG19 reference genome used by GPF |
| Description: | HG19 Reference GenomeDefault HG19 reference genome used by GPF |
| Labels: |
X chromosome:
Y chromosome:
A: 27.27%
C: 18.88%
G: 18.89%
N: 7.64%
T: 27.31%
AA: 9.03%
AC: 4.65%
AG: 6.46%
AN: 0.00%
AT: 7.14%
CA: 6.70%
CC: 4.81%
CG: 0.91%
CN: 0.00%
CT: 6.46%
GA: 5.48%
GC: 3.94%
GG: 4.81%
GN: 0.00%
GT: 4.66%
NA: 0.00%
NC: 0.00%
NG: 0.00%
NN: 7.64%
NT: 0.00%
TA: 6.06%
TC: 5.48%
TG: 6.71%
TN: 0.00%
TT: 9.05%
| Chrom | Length |
| 1 | 249250621 |
| 2 | 243199373 |
| 3 | 198022430 |
| 4 | 191154276 |
| 5 | 180915260 |
| 6 | 171115067 |
| 7 | 159138663 |
| 8 | 146364022 |
| 9 | 141213431 |
| 10 | 135534747 |
| 11 | 135006516 |
| 12 | 133851895 |
| 13 | 115169878 |
| 14 | 107349540 |
| 15 | 102531392 |
| 16 | 90354753 |
| 17 | 81195210 |
| 18 | 78077248 |
| 19 | 59128983 |
| 20 | 63025520 |
| 21 | 48129895 |
| 22 | 51304566 |
| X | 155270560 |
| Y | 59373566 |
| MT | 16569 |
| GL000207.1 | 4262 |
| GL000226.1 | 15008 |
| GL000229.1 | 19913 |
| GL000231.1 | 27386 |
| GL000210.1 | 27682 |
| GL000239.1 | 33824 |
| GL000235.1 | 34474 |
| GL000201.1 | 36148 |
| GL000247.1 | 36422 |
| GL000245.1 | 36651 |
| GL000197.1 | 37175 |
| GL000203.1 | 37498 |
| GL000246.1 | 38154 |
| GL000249.1 | 38502 |
| GL000196.1 | 38914 |
| GL000248.1 | 39786 |
| GL000244.1 | 39929 |
| GL000238.1 | 39939 |
| GL000202.1 | 40103 |
| GL000234.1 | 40531 |
| GL000232.1 | 40652 |
| GL000206.1 | 41001 |
| GL000240.1 | 41933 |
| GL000236.1 | 41934 |
| GL000241.1 | 42152 |
| GL000243.1 | 43341 |
| GL000242.1 | 43523 |
| GL000230.1 | 43691 |
| GL000237.1 | 45867 |
| GL000233.1 | 45941 |
| GL000204.1 | 81310 |
| GL000198.1 | 90085 |
| GL000208.1 | 92689 |
| GL000191.1 | 106433 |
| GL000227.1 | 128374 |
| GL000228.1 | 129120 |
| GL000214.1 | 137718 |
| GL000221.1 | 155397 |
| GL000209.1 | 159169 |
| GL000218.1 | 161147 |
| GL000220.1 | 161802 |
| GL000213.1 | 164239 |
| GL000211.1 | 166566 |
| GL000199.1 | 169874 |
| GL000217.1 | 172149 |
| GL000216.1 | 172294 |
| GL000215.1 | 172545 |
| GL000205.1 | 174588 |
| GL000219.1 | 179198 |
| GL000224.1 | 179693 |
| GL000223.1 | 180455 |
| GL000195.1 | 182896 |
| GL000212.1 | 186858 |
| GL000222.1 | 186861 |
| GL000200.1 | 187035 |
| GL000193.1 | 189789 |
| GL000194.1 | 191469 |
| GL000225.1 | 211173 |
| GL000192.1 | 547496 |
| phiX | 5386 |
| Filename | Size | md5 |
|---|---|---|
| README.txt | 450.0 B | 19813221aff2b8cfba3f42954bf9d1f3 |
| chrAll.fa | 2.94 GB | 6e399411b0338bd267f37a4b76ad936b |
| chrAll.fa.dvc | 83.0 B | c0738e5f26e6d81f6732971d1201480e |
| chrAll.fa.fai | 2.71 KB | a449540ce2cb85046d2538c0c4b1a729 |
| chrAll.fa.fai.dvc | 81.0 B | d02c0e687808db3cc3b37559eec7fdf8 |
| genomic_resource.yaml | 298.0 B | 149b7728e25a01234f61315cc5662b41 |
| statistics/ |