Resource

Id: hg38/cnv_collections/gnomAD.v4.1_Genome_SV
Type: cnv_collection
Version: 0
Summary:
Description:
Labels:

Scores

ID Type Default annotation Description Histogram Range
deletion_duplication str

deletion_duplication
duplication or deletion
 HISTOGRAM FOR deletion_duplication deletion, duplication
cnv_name str

cnv_name
Handy name to refer to the CNV.

No histogram: Empty histogram for cnv_name in a region: Too many unique values 101 for categorical histogram.

 NO DOMAIN
SVLEN int

SVLEN
SV length
 HISTOGRAM FOR SVLEN [50, 2.22e+08]
AN int

AN
Total number of alleles genotyped (biallelic sites only).
 HISTOGRAM FOR AN [1, 1.26e+05]
AC int

AC
Number of non-reference alleles observed (biallelic sites only).
 HISTOGRAM FOR AC [1, 1.26e+05]
AF float

AF
Allele frequency (biallelic sites only).
 HISTOGRAM FOR AF [8e-06, 1]
AN_afr int

AN_afr
Total number of African-American alleles genotyped (biallelic sites only).
 HISTOGRAM FOR AN_afr [0, 3.38e+04]
AN_amr int

AN_amr
Total number of Latino alleles genotyped (biallelic sites only).
 HISTOGRAM FOR AN_amr [0, 1.26e+04]
AN_asj int

AN_asj
Total number of Ashkenazi Jewish alleles genotyped (biallelic sites only).
 HISTOGRAM FOR AN_asj [0, 3.18e+03]
AN_eas int

AN_eas
Total number of East Asian alleles genotyped (biallelic sites only).
 HISTOGRAM FOR AN_eas [0, 4.05e+03]
AN_fin int

AN_fin
Total number of Finnish alleles genotyped (biallelic sites only).
 HISTOGRAM FOR AN_fin [0, 6.48e+03]
AN_mid int

AN_mid
Total number of Middle Eastern alleles genotyped (biallelic sites only).
 HISTOGRAM FOR AN_mid [0, 64]
AN_nfe int

AN_nfe
Total number of Non-Finnish European alleles genotyped (biallelic sites only).
 HISTOGRAM FOR AN_nfe [0, 5.91e+04]
AN_sas int

AN_sas
Total number of South Asian alleles genotyped (biallelic sites only).
 HISTOGRAM FOR AN_sas [0, 4.41e+03]
AC_afr int

AC_afr
Number of non-reference African-American alleles observed (biallelic sites only).
 HISTOGRAM FOR AC_afr [0, 3.38e+04]
AC_amr int

AC_amr
Number of non-reference Latino alleles observed (biallelic sites only).
 HISTOGRAM FOR AC_amr [0, 1.26e+04]
AC_asj int

AC_asj
Number of non-reference Ashkenazi Jewish alleles observed (biallelic sites only).
 HISTOGRAM FOR AC_asj [0, 3.18e+03]
AC_eas int

AC_eas
Number of non-reference East Asian alleles observed (biallelic sites only).
 HISTOGRAM FOR AC_eas [0, 4.05e+03]
AC_fin int

AC_fin
Number of non-reference Finnish alleles observed (biallelic sites only).
 HISTOGRAM FOR AC_fin [0, 6.48e+03]
AC_mid int

AC_mid
Number of non-reference Middle Eastern alleles observed (biallelic sites only).
 HISTOGRAM FOR AC_mid [0, 64]
AC_nfe int

AC_nfe
Number of non-reference Non-Finnish European alleles observed (biallelic sites only).
 HISTOGRAM FOR AC_nfe [0, 5.91e+04]
AC_sas int

AC_sas
Number of non-reference South Asian alleles observed (biallelic sites only).
 HISTOGRAM FOR AC_sas [0, 4.41e+03]
AF_afr float

AF_afr
African-American allele frequency (biallelic sites only).
 HISTOGRAM FOR AF_afr [0, 1]
AF_amr float

AF_amr
Latino allele frequency (biallelic sites only).
 HISTOGRAM FOR AF_amr [0, 1]
AF_asj float

AF_asj
Ashkenazi Jewish allele frequency (biallelic sites only).
 HISTOGRAM FOR AF_asj [0, 1]
AF_eas float

AF_eas
East Asian allele frequency (biallelic sites only).
 HISTOGRAM FOR AF_eas [0, 1]
AF_fin float

AF_fin
Finnish allele frequency (biallelic sites only).
 HISTOGRAM FOR AF_fin [0, 1]
AF_mid float

AF_mid
Middle Eastern allele frequency (biallelic sites only).
 HISTOGRAM FOR AF_mid [0, 1]
AF_nfe float

AF_nfe
Non-Finnish European allele frequency (biallelic sites only).
 HISTOGRAM FOR AF_nfe [0, 1]
AF_sas float

AF_sas
South Asian allele frequency (biallelic sites only).
 HISTOGRAM FOR AF_sas [0, 1]

Files

Filename Size md5
DataPrep.py 7.58 KB ba2d4e268414810cba7614ed25289307
genomic_resource.yaml 5.23 KB 5abba66d9ecb3d395989f028e5ab07d6
gnomad.v4.1.sv.sites.tsv 328.98 MB 96ad8177e46fa9d5bbcef48068516b93
gnomad.v4.1.sv.sites.tsv.dvc 109.0 B c9c7278a49a6239a7faa2f44ce24d497
gnomad.v4.1.sv.sites.vcf 11.88 GB 59ee22c4615e584d3d663a2af37b9e84
gnomad.v4.1.sv.sites.vcf.dvc 111.0 B e4f9060b1f79dcf581f1712b797f1fcd
statistics/