Resource

Id:hg38/scores/phastCons30way
Type:position_score
Summary: ## phastCons30way This file is from: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons30way/README.txt This score contains compressed phastCons scores for multiple alignments of 29 genome sequences to the human genome. For a description of the phastCons fixed step wiggle data file format, see: http://genome.ucsc.edu/goldenPath/help/phastCons.html For more information about this data, see the track description for the Conservation track: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=tarSyr2&g=cons30way ----------------------------------------------------------------------------- Assemblies used in these alignments: (alignment type) Human - Homo sapiens Dec. 2013 (GRCh38/hg38) (reference) Angolan colobus - Colobus angolensis palliatus Mar. 2015 (Cang.pa_1.0/colAng1) (syntenic) Armadillo - Dasypus novemcinctus Dec. 2011 (Baylor/dasNov3) (syntenic) Baboon - Papio anubis Feb. 2013 (Baylor Panu_2.0/papAnu3) (reciprocal best) Black lemur - Eulemur macaco Aug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1) (reciprocal best) Black snub-nosed monkey - Rhinopithecus bieti Aug. 2016 (ASM169854v1/rhiBie1) (reciprocal best) Bonobo - Pan paniscus Aug. 2015 (MPI-EVA panpan1.1/panPan2) (syntenic) Bushbaby - Otolemur garnettii Mar. 2011 (Broad/otoGar3) (syntenic) Chimp - Pan troglodytes May 2016 (Pan_tro 3.0/panTro5) (syntenic) Coquerel's sifaka - Propithecus coquereli Mar. 2015 (Pcoq_1.0/proCoq1) (syntenic) Crab-eating macaque - Macaca fascicularis Jun. 2013 (Macaca_fascicularis_5.0/macFas5) (syntenic) Dog - Canis lupus familiaris Sep. 2011 (Broad CanFam3.1/canFam3) (syntenic) Drill - Mandrillus leucophaeus Mar. 2015 (Mleu.le_1.0/manLeu1) (syntenic) Gibbon - Nomascus leucogenys Oct. 2012 (GGSC Nleu3.0/nomLeu3) (syntenic) Golden snub-nosed monkey - Rhinopithecus roxellana Oct. 2014 (Rrox_v1/rhiRox1) (reciprocal best) Gorilla - Gorilla gorilla gorilla Mar. 2016 (GSMRT3/gorGor5) (syntenic) Green monkey - Chlorocebus sabaeus Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) (syntenic) Ma's night monkey - Aotus nancymaae Jun. 2017 (Anan_2.0/aotNan1) (syntenic) Marmoset - Callithrix jacchus March 2009 (WUGSC 3.2/calJac3) (syntenic) Mouse - Mus musculus Dec. 2011 (GRCm38/mm10) (syntenic) Mouse lemur - Microcebus murinus Feb. 2017 (Mmur_3.0/micMur3) (syntenic) Orangutan - Pongo pygmaeus abelii July 2007 (WUGSC 2.0.2/ponAbe2) (reciprocal best) Pig-tailed macaque - Macaca nemestrina Mar. 2015 (Mnem_1.0/macNem1) (syntenic) Proboscis monkey - Nasalis larvatus Nov. 2014 (Charlie1.0/nasLar1) (reciprocal best) Rhesus - Macaca mulatta Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (syntenic) Sclater's lemur - Eulemur flavifrons Aug. 2015 (Eflavifronsk33QCA/eulFla1) (reciprocal best) Sooty mangabey - Cercocebus atys Mar. 2015 (Caty_1.0/cerAty1) (syntenic) Squirrel monkey - Saimiri boliviensis Oct. 2011 (Broad/saiBol1) (syntenic) Tarsier - Tarsius syrichta Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) (reciprocal best) White-faced sapajou - Cebus capucinus imitator Apr. 2016 (Cebus_imitator-1.0/cebCap1) (syntenic)
Description:

phastCons30way

This file is from:

http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons30way/README.txt

This score contains compressed phastCons scores for multiple alignments of 29 genome sequences to the human genome.

For a description of the phastCons fixed step wiggle data file format, see: http://genome.ucsc.edu/goldenPath/help/phastCons.html

For more information about this data, see the track description for the Conservation track: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=tarSyr2&g=cons30way


Assemblies used in these alignments: (alignment type)

Human - Homo sapiens Dec. 2013 (GRCh38/hg38) (reference) Angolan colobus - Colobus angolensis palliatus Mar. 2015 (Cang.pa1.0/colAng1) (syntenic) Armadillo - Dasypus novemcinctus Dec. 2011 (Baylor/dasNov3) (syntenic) Baboon - Papio anubis Feb. 2013 (Baylor Panu2.0/papAnu3) (reciprocal best) Black lemur - Eulemur macaco Aug. 2015 (EmacacorefEfBWAoneround/eulMac1) (reciprocal best) Black snub-nosed monkey - Rhinopithecus bieti Aug. 2016 (ASM169854v1/rhiBie1) (reciprocal best) Bonobo - Pan paniscus Aug. 2015 (MPI-EVA panpan1.1/panPan2) (syntenic) Bushbaby - Otolemur garnettii Mar. 2011 (Broad/otoGar3) (syntenic) Chimp - Pan troglodytes May 2016 (Pantro 3.0/panTro5) (syntenic) Coquerel's sifaka - Propithecus coquereli Mar. 2015 (Pcoq1.0/proCoq1) (syntenic) Crab-eating macaque - Macaca fascicularis Jun. 2013 (Macacafascicularis5.0/macFas5) (syntenic) Dog - Canis lupus familiaris Sep. 2011 (Broad CanFam3.1/canFam3) (syntenic) Drill - Mandrillus leucophaeus Mar. 2015 (Mleu.le1.0/manLeu1) (syntenic) Gibbon - Nomascus leucogenys Oct. 2012 (GGSC Nleu3.0/nomLeu3) (syntenic) Golden snub-nosed monkey - Rhinopithecus roxellana Oct. 2014 (Rroxv1/rhiRox1) (reciprocal best) Gorilla - Gorilla gorilla gorilla Mar. 2016 (GSMRT3/gorGor5) (syntenic) Green monkey - Chlorocebus sabaeus Mar. 2014 (Chlorocebussabeus 1.1/chlSab2) (syntenic) Ma's night monkey - Aotus nancymaae Jun. 2017 (Anan2.0/aotNan1) (syntenic) Marmoset - Callithrix jacchus March 2009 (WUGSC 3.2/calJac3) (syntenic) Mouse - Mus musculus Dec. 2011 (GRCm38/mm10) (syntenic) Mouse lemur - Microcebus murinus Feb. 2017 (Mmur3.0/micMur3) (syntenic) Orangutan - Pongo pygmaeus abelii July 2007 (WUGSC 2.0.2/ponAbe2) (reciprocal best) Pig-tailed macaque - Macaca nemestrina Mar. 2015 (Mnem1.0/macNem1) (syntenic) Proboscis monkey - Nasalis larvatus Nov. 2014 (Charlie1.0/nasLar1) (reciprocal best) Rhesus - Macaca mulatta Nov. 2015 (BCM Mmul8.0.1/rheMac8) (syntenic) Sclater's lemur - Eulemur flavifrons Aug. 2015 (Eflavifronsk33QCA/eulFla1) (reciprocal best) Sooty mangabey - Cercocebus atys Mar. 2015 (Caty1.0/cerAty1) (syntenic) Squirrel monkey - Saimiri boliviensis Oct. 2011 (Broad/saiBol1) (syntenic) Tarsier - Tarsius syrichta Sep. 2013 (Tarsiussyrichta-2.0.1/tarSyr2) (reciprocal best) White-faced sapajou - Cebus capucinus imitator Apr. 2016 (Cebus_imitator-1.0/cebCap1) (syntenic)

Labels:
  • reference_genome: hg38/genomes/GRCh38-hg38

Scores

id type default annotation description histogram range
phastCons30way float

phastcons30way

phastCons30way HISTOGRAM FOR phastCons30way [0.000, 1.000]

Files

Filename Size md5
genomic_resource.yaml 4.48 KB 772b5e65e9a5c96e01d33c6a35289240
phastCons30way.bedGraph.gz 12.97 GB 49e1fa3a71f991d5abbbf4700420b34d
phastCons30way.bedGraph.gz.dvc 101.0 B 5da26b64f3146dd8511f221a1a8b3b72
phastCons30way.bedGraph.gz.tbi 2.95 MB 7d1681162087c9935480ba13a41a027e
phastCons30way.bedGraph.gz.tbi.dvc 101.0 B 16184e3388dbae2595d136f996633d7f
statistics/