Resource

Id:hg38/scores/phyloP7way
Type:position_score
Summary: phyloP (phylogenetic p-values) conservation score based on the multiple alignments of 6 vertebrate genomes to the human genome. The higher the more conservative. Scores range from from -5.220 to 1.062.
Description:

phyloP7way

Dowloaded long time ago from USCS genome browser by Adriana. Need to be updated.

This resource contains conservation scoring by phyloP (phylogenetic p-values) from the PHAST package (http://compgen.bscb.cornell.edu/phast/) for multiple alignments of 6 vertebrate genomes to the human genome.

The phastCons data can be found at: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons7way/

The multiple alignments and methods description are at: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/multiz7way/

For more information about this data, see the track description for the Conservation track: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg38&g=cons7way

Labels:
  • reference_genome: hg38/genomes/GRCh38-hg38

Scores

id type default annotation description histogram range
phyloP7way float

phylop7way

The scores is a number that reflects the conservation at a position. HISTOGRAM FOR phyloP7way [-5.220, 1.062]

Files

Filename Size md5
genomic_resource.yaml 1.73 KB c2e13f366a34160ea005ed58e7a9fc19
phyloP7way.bedGraph.gz 12.54 GB bab39fe18d78c99578c471adab7fa651
phyloP7way.bedGraph.gz.dvc 97.0 B 2567629e708c6797c4e87e14cf537458
phyloP7way.bedGraph.gz.tbi 2.95 MB 926c1ddc40daf487e31973ba15508f57
phyloP7way.bedGraph.gz.tbi.dvc 97.0 B 3d0e23840aebebee46f1d30fa9bdfd83
statistics/