Resource

Id:hg19/scores/phyloP46_vertebrates
Type:position_score
Summary: phyloP (phylogenetic p-values) conservation score based on the multiple alignments of 45 vertebrate genomes to the human genome. The higher the more conservative.
Description:

phyloP46way vertebrates

This file is from:

http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP46way/README.txt

This directory contains conservation scoring by phyloP (phylogenetic p-values) from the PHAST package (http://compgen.bscb.cornell.edu/phast/) for multiple alignments of 45 vertebrate genomes to the human genome, plus alternate sets of scores for the primate species and the placental mammal species in the alignments.

Labels:
  • reference_genome: hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174

Scores

id type default annotation description histogram range
phyloP46_vertebrates float

phylop46_vertebrates

The scores is a number that reflects the conservation at a position. HISTOGRAM FOR phyloP46_vertebrates [-14.080, 6.424]

Files

Filename Size md5
genomic_resource.yaml 1.36 KB 0238c2fd7036d81a24d6366a478cb5d2
phyloP46_vertebrates.bedGraph.gz 14.71 GB 4384ba92e608ae7c822476105124a8fc
phyloP46_vertebrates.bedGraph.gz.dvc 107.0 B 07937e4cf38c5821f991c2e0956bfb1f
phyloP46_vertebrates.bedGraph.gz.tbi 2.78 MB 8aaed3280ae4cb0b017c9573a2e12782
phyloP46_vertebrates.bedGraph.gz.tbi.dvc 107.0 B bd48cc48cdce70bcdd13d584e1aa6c88
statistics/