Resource

Id: hg38/cnv_collections/gnomAD.v4.1_Exome_CNV
Type: cnv_collection
Version: 0
Summary:
Description:
Labels:

Scores

ID Type Default annotation Description Histogram Range
deletion_duplication str

deletion_duplication
duplication or deletion
 HISTOGRAM FOR deletion_duplication duplication, deletion
cnv_name str

cnv_name
Handy name to refer to the CNV.

No histogram: Empty histogram for cnv_name in a region: Too many unique values 101 for categorical histogram.

 NO DOMAIN
SVLEN int

SVLEN
Length of CNV
 HISTOGRAM FOR SVLEN [276.000, 103231395.000]
SC int

SC
Number of releasable samples with a variant at this site
 HISTOGRAM FOR SC [1.000, 4067.000]
SN int

SN
Total number of releasable samples considered at this site
 HISTOGRAM FOR SN [13178.000, 464297.000]
SF float

SF
Proportion of releasable samples (site frequency) with a variant at this site
 HISTOGRAM FOR SF [0.000, 0.009]
SC_afr int

SC_afr
Number of releasable AFR samples with a variant at this site
 HISTOGRAM FOR SC_afr [0.000, 1275.000]
SC_amr int

SC_amr
Number of releasable AMR samples with a variant at this site
 HISTOGRAM FOR SC_amr [0.000, 258.000]
SC_asj int

SC_asj
Number of releasable ASJ samples with a variant at this site
 HISTOGRAM FOR SC_asj [0.000, 551.000]
SC_eas int

SC_eas
Number of releasable EAS samples with a variant at this site
 HISTOGRAM FOR SC_eas [0.000, 615.000]
SC_fin int

SC_fin
Number of releasable FIN samples with a variant at this site
 HISTOGRAM FOR SC_fin [0.000, 725.000]
SC_mid int

SC_mid
Number of releasable MID samples with a variant at this site
 HISTOGRAM FOR SC_mid [0.000, 79.000]
SC_nfe int

SC_nfe
Number of releasable NFE samples with a variant at this site
 HISTOGRAM FOR SC_nfe [0.000, 3494.000]
SC_sas int

SC_sas
Number of releasable SAS samples with a variant at this site
 HISTOGRAM FOR SC_sas [0.000, 2020.000]
SN_afr int

SN_afr
Total number of releasable AFR samples considered at this site
 HISTOGRAM FOR SN_afr [157.000, 11335.000]
SN_amr int

SN_amr
Total number of releasable AMR samples considered at this site
 HISTOGRAM FOR SN_amr [253.000, 20800.000]
SN_asj int

SN_asj
Total number of releasable ASJ samples considered at this site
 HISTOGRAM FOR SN_asj [128.000, 10397.000]
SN_eas int

SN_eas
Total number of releasable EAS samples considered at this site
 HISTOGRAM FOR SN_eas [159.000, 15938.000]
SN_fin int

SN_fin
Total number of releasable FIN samples considered at this site
 HISTOGRAM FOR SN_fin [106.000, 22688.000]
SN_mid int

SN_mid
Total number of releasable MID samples considered at this site
 HISTOGRAM FOR SN_mid [23.000, 1414.000]
SN_nfe int

SN_nfe
Total number of releasable NFE samples considered at this site
 HISTOGRAM FOR SN_nfe [4445.000, 326266.000]
SN_sas int

SN_sas
Total number of releasable SAS samples considered at this site
 HISTOGRAM FOR SN_sas [191.000, 34481.000]
SF_afr float

SF_afr
Proportion of releasable AFR samples with a variant at this site
 HISTOGRAM FOR SF_afr [0.000, 0.000]
SF_amr float

SF_amr
Proportion of releasable AMR samples with a variant at this site
 HISTOGRAM FOR SF_amr [0.000, 0.000]
SF_asj float

SF_asj
Proportion of releasable ASJ samples with a variant at this site
 HISTOGRAM FOR SF_asj [0.000, 0.000]
SF_eas float

SF_eas
Proportion of releasable EAS samples with a variant at this site
 HISTOGRAM FOR SF_eas [0.000, 0.000]
SF_fin float

SF_fin
Proportion of releasable FIN samples with a variant at this site
 HISTOGRAM FOR SF_fin [0.000, 0.000]
SF_mid float

SF_mid
Proportion of releasable MID samples with a variant at this site
 HISTOGRAM FOR SF_mid [0.000, 0.000]
SF_nfe float

SF_nfe
Proportion of releasable NFE samples with a variant at this site
 HISTOGRAM FOR SF_nfe [0.000, 0.000]
SF_sas float

SF_sas
Proportion of releasable SAS samples with a variant at this site
 HISTOGRAM FOR SF_sas [0.000, 0.000]

Files

Filename Size md5
DataPrep.py 8.02 KB 415423728d5e7b5b370a5b78aab16474
genomic_resource.yaml 4.67 KB 64bdd3257779be6580e8f3128336d925
gnomad.v4.1.cnv.all.tsv 11.44 MB 7d289377219b5ad9d2fa09fba1321e22
gnomad.v4.1.cnv.all.tsv.dvc 107.0 B a2764877e35ffff337660794c473f8a6
gnomad.v4.1.cnv.all.vcf 93.34 MB 590aabdc6e5ee6f26893e87bc31817a1
gnomad.v4.1.cnv.all.vcf.dvc 107.0 B d0315e4e49cde0f80dbf3a5d3fdc983b
statistics/