phastCons20way

This file is from:

http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons20way/README.txt

This score contains compressed phastCons scores for multiple alignments of 19 genome sequences to the human genome.

For a description of the phastCons fixed step wiggle data file format, see: http://genome.ucsc.edu/goldenPath/help/phastCons.html

The multiple alignments and methods description are at: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/multiz20way/

For more information about this data, see the track description for the Conservation track: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=tarSyr2&g=cons20way

Assemblies used in these alignments: (alignment type)

Human - Homo sapiens Dec. 2013 (GRCh38/hg38) reference

Baboon - Papio anubis Mar. 2012 (Baylor Panu2.0/papAnu2) syntenic Bushbaby - Otolemur garnettii Mar. 2011 (Broad/otoGar3) reciprocal best Bonobo - Pan paniscus May. 2012 (Max-Planck/panPan1) reciprocal best Chimp - Pan troglodytes Feb. 2011 (CSAC 2.1.4/panTro4) syntenic Crab-eating macaque - Macaca fascicularis Jun 2013 (Macacafascicularis5.0/macFas5) syntenic Gibbon - Nomascus leucogenys Oct. 2012 (GGSC Nleu3.0/nomLeu3) syntenic Golden snub-nosed monkey - Rhinopithecus roxellana Oct. 2014 (Rroxv1/rhiRox1) reciprocal best Gorilla - Gorilla gorilla gorilla May 2011 (gorGor3.1/gorGor3) reciprocal best Green monkey - Chlorocebus sabaeus Mar. 2014 (Chlorocebussabeus 1.1/chlSab2) syntenic Marmoset - Callithrix jacchus Mar. 2009 (WUGSC 3.2/calJac3) syntenic Mouse lemur - Microcebus murinus Jul. 2007 (Broad/micMur1) reciprocal best Orangutan - Pongo pygmaeus abelii Jul. 2007 (WUGSC 2.0.2/ponAbe2) syntenic Proboscis monkey - Nasalis larvatus Nov. 2014 (Charlie1.0/nasLar1) reciprocal best Rhesus - Macaca mulatta Oct. 2010 (BGI CR1.0/rheMac3) syntenic Squirrel monkey - Saimiri boliviensis Oct. 2011 (Broad/saiBol1) reciprocal best Tarsier - Tarsius syrichta Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) reciprocal best Tree shrew - Tupaia belangeri Dec. 2006 (Broad/tupBel1) reciprocal best Mouse - Mus musculus Dec. 2011 (GRCm38/mm10) syntenic Dog - Canis lupus familiaris Sep. 2011 (Broad CanFam3.1/canFam3) syntenic

• reference_genome: hg38/genomes/GRCh38-hg38