| samocha_enrichment_background |
enrichment/samocha_background
|
0 |
4 |
1.38 MB |
Samocha's Enrichment Background Model
|
| gene_score |
gene_properties/gene_scores/Iossifov_Wigler_PNAS_2015
|
0 |
6 |
7.8 MB |
Probability of a gene to be associated with autism
|
| gene_score |
gene_properties/gene_scores/LGD
|
0 |
7 |
546.21 KB |
Gene vulnerability/intolerance score based on the rare LGD variants
|
| gene_score |
gene_properties/gene_scores/LOEUF
|
0 |
9 |
13.19 MB |
Degree of intolerance to predicted Loss-of-Function (pLoF) variation
|
| gene_score |
gene_properties/gene_scores/RVIS
|
0 |
7 |
458.61 KB |
Residual Variation Intolerance Score
|
| gene_score |
gene_properties/gene_scores/SFARI_gene_score
|
0 |
7 |
151.75 KB |
SFARI gene score release 01-13-2021
|
| gene_score |
gene_properties/gene_scores/SFARI_gene_score_2024_Q1
|
0 |
9 |
190.97 KB |
SFARI gene score 2024 Q1 release
|
| gene_score |
gene_properties/gene_scores/Satterstrom_Buxbaum_Cell_2020
|
0 |
6 |
619.89 KB |
TADA derived gene-autism association score
|
| gene_score |
gene_properties/gene_scores/pLI
|
0 |
7 |
893.43 KB |
Probability of Loss-of-Function Intolerance
|
| gene_score |
gene_properties/gene_scores/pRec
|
0 |
7 |
895.26 KB |
Probability of biallelic loss-of-function intolerance |
| gene_set |
gene_properties/gene_sets/GO
|
0 |
4 |
12.07 MB |
GO (Gene Ontology) gene sets
|
| gene_set |
gene_properties/gene_sets/GO_2024-06-17_release
|
0 |
9 |
50.78 MB |
GO terms 2024-06-17 release
|
| gene_set |
gene_properties/gene_sets/MSigDB_curated
|
0 |
3 |
3.12 MB |
MSigDB (Molecular Signatures Database) gene sets derived from a variety of curated sources |
| gene_set |
gene_properties/gene_sets/PFAM_37.0_domains
|
0 |
7 |
2.84 MB |
PFAM 37.0 domains
|
| gene_set |
gene_properties/gene_sets/autism
|
0 |
7 |
4.43 KB |
Autism gene sets derived from publications |
| gene_set |
gene_properties/gene_sets/disease
|
0 |
3 |
66.81 KB |
Gene-disease associations
|
| gene_set |
gene_properties/gene_sets/domain
|
0 |
3 |
391.24 KB |
Protein domains or motifs
|
| gene_set |
gene_properties/gene_sets/gene2phenotype
|
0 |
12 |
4.3 MB |
gene2phenotype 28_08_2024 release
|
| gene_set |
gene_properties/gene_sets/main
|
0 |
17 |
103.97 KB |
Variety of gene sets with potential relevance to autism |
| gene_set |
gene_properties/gene_sets/miRNA
|
0 |
4 |
1.6 MB |
miRNA target sets |
| gene_set |
gene_properties/gene_sets/miRNA_Darnell
|
0 |
3 |
95.2 KB |
miRNA target sets by Darnell |
| gene_set |
gene_properties/gene_sets/relevant
|
0 |
15 |
101.82 KB |
Variety of gene sets with potential relevance to autism
|
| gene_set |
gene_properties/gene_sets/sfari
|
0 |
11 |
11.6 KB |
SFARI gene sets with relevance to autism
|
| gene_set |
gene_properties/gene_sets/spark
|
0 |
5 |
1.29 KB |
SPARK gene sets with relevance to autism
|
| gene_score |
hg19/enrichment/coding_length_in_target_ref_gene_v20190211
|
0 |
5 |
110.4 KB |
Coding length in target enrichment background using refGene gene models for HG19 from 20190211
|
| gene_score |
hg19/enrichment/coding_length_ref_gene_v20190211
|
0 |
5 |
161.48 KB |
Coding length enrichment background using refGene gene models for HG19 from 20190211
|
| gene_models |
hg19/gene_models/ccds_v201309
|
0 |
5 |
2.56 MB |
CCDS (Consensus CDS) gene model 2013 |
| gene_models |
hg19/gene_models/knownGene_v201304
|
0 |
5 |
5.5 MB |
knownGene gene model 2013 |
| gene_models |
hg19/gene_models/refGeneMito_v201309
|
0 |
5 |
3.98 MB |
RefGene gene model 2013 with mitochondrial genes
|
| gene_models |
hg19/gene_models/refGene_v201309
|
0 |
5 |
3.98 MB |
RefGene gene model 2013
|
| gene_models |
hg19/gene_models/refGene_v20190211
|
0 |
5 |
5.47 MB |
RefGene gene model 2019
|
| genome |
hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174
|
0 |
92 |
2.94 GB |
HG19 reference genome
|
| position_score |
hg19/phastCons46_placentals
|
0 |
6 |
20.18 GB |
Conservation score based on the multiple alignment of 46 species using placental species
|
| position_score |
hg19/phastCons46_primates
|
0 |
6 |
20.18 GB |
Conservation score based on the multiple alignment of 46 species using primate species
|
| position_score |
hg19/phastCons46_vertebrates
|
0 |
6 |
20.18 GB |
Conservation score based on the multiple alignment of 46 species using vertebrate species
|
| position_score |
hg19/phyloP46_placentals
|
0 |
6 |
8.02 GB |
Conservation score based on the multiple alignment of 46 species using placental species
|
| position_score |
hg19/phyloP46_primates
|
0 |
6 |
20.18 GB |
Conservation score based on the multiple alignment of 46 species using primate species
|
| position_score |
hg19/phyloP46_vertebrates
|
0 |
6 |
20.18 GB |
Conservation score based on the multiple alignment of 46 species using vertebrate species
|
| np_score |
hg19/scores/AlphaMissense
|
0 |
13 |
1.15 GB |
Functional impact of mutations on protein function
|
| np_score |
hg19/scores/CADD
|
0 |
10 |
79.37 GB |
CADD score for functional prediction of a SNP
|
| position_score |
hg19/scores/FitCons-i6-merged
|
0 |
8 |
105.18 MB |
fitCons (fitness consequences) score estimates selective pressure on genomic positions.
|
| position_score |
hg19/scores/FitCons2_E035
|
0 |
8 |
291.53 MB |
FitCons2 score computed for the Primary haematopoietic stem cells (HSCs) (E035).
|
| position_score |
hg19/scores/FitCons2_E067
|
0 |
8 |
260.98 MB |
Cell-type specific FitCons scores for Brain Angular Gyrus tissue (E067).
|
| position_score |
hg19/scores/FitCons2_E068
|
0 |
8 |
270.24 MB |
Cell-type specific FitCons scores for Brain Anterior Caudate tissue (E068).
|
| position_score |
hg19/scores/FitCons2_E069
|
0 |
8 |
262.14 MB |
Cell-type specific FitCons scores for Brain Cingulate Gyrus tissue (E069).
|
| position_score |
hg19/scores/FitCons2_E070
|
0 |
8 |
262.33 MB |
Cell-type specific FitCons scores for Brain Germinal Matrix tissue (E070).
|
| position_score |
hg19/scores/FitCons2_E071
|
0 |
8 |
255.46 MB |
Cell-type specific FitCons scores for Brain Hippocampus Middle tissue (E071).
|
| position_score |
hg19/scores/FitCons2_E072
|
0 |
8 |
257.62 MB |
Cell-type specific FitCons scores for Brain Inferior Temporal Lobe tissue (E072).
|
| position_score |
hg19/scores/FitCons2_E073
|
0 |
8 |
266.96 MB |
FitCons2 score computed for the Brain Dorsolateral Prefrontal Cortex (E073) tissue.
|
| position_score |
hg19/scores/FitCons2_E074
|
0 |
8 |
262.13 MB |
Cell-type specific FitCons scores for Brain Substantia Nigra tissue (E074).
|
| position_score |
hg19/scores/FitCons2_E081
|
0 |
8 |
276.05 MB |
Cell-type specific FitCons scores for Fetal Brain Male tissue (E081).
|
| position_score |
hg19/scores/FitCons2_E082
|
0 |
8 |
278.89 MB |
Cell-type specific FitCons scores for Fetal Brain Female tissue (E082).
|
| position_score |
hg19/scores/LINSIGHT
|
0 |
6 |
1.3 GB |
The likelihood of negative selection on noncoding sites
|
| position_score |
hg19/scores/Linsight
|
0 |
8 |
1.35 GB |
LINSIGHT score quantifies the likelihood of negative selection on noncoding sites.
|
| np_score |
hg19/scores/MPC
|
0 |
9 |
2.26 GB |
MPC (Missense badness, PolyPhen-2, and Constraint) is a composite score that predicts the impact of missense variants.
|
| position_score |
hg19/scores/fitCons2/FitCons2_E001
|
0 |
6 |
230.6 MB |
Cell-type specific FitCons scores for ES-I3 Cells (E001)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E002
|
0 |
6 |
234.05 MB |
Cell-type specific FitCons scores for ES-WA7 Cells (E002)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E003
|
0 |
6 |
231.79 MB |
Cell-type specific FitCons scores for H1 Cells (E003)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E004
|
0 |
6 |
220.58 MB |
Cell-type specific FitCons scores for H1 BMP4 Derived Mesendoderm Cultured Cells (E004)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E005
|
0 |
6 |
197.38 MB |
Cell-type specific FitCons scores for H1 BMP4 Derived Trophoblast Cultured Cells (E005)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E006
|
0 |
6 |
187.59 MB |
Cell-type specific FitCons scores for H1 Derived Mesenchymal Stem Cells (E006)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E007
|
0 |
6 |
219.95 MB |
Cell-type specific FitCons scores for H1 Derived Neuronal Progenitor Cultured Cells (E007)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E008
|
0 |
6 |
227.43 MB |
Cell-type specific FitCons scores for H9 Cells (E008)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E009
|
0 |
6 |
224.8 MB |
Cell-type specific FitCons scores for H9 Derived Neuronal Progenitor Cultured Cells (E009)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E010
|
0 |
6 |
214.44 MB |
Cell-type specific FitCons scores for H9 Derived Neuron Cultured Cells (E010)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E011
|
0 |
6 |
214.45 MB |
Cell-type specific FitCons scores for hESC Derived CD184+ Endoderm Cultured Cells (E011)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E012
|
0 |
6 |
229.97 MB |
Cell-type specific FitCons scores for hESC Derived CD56+ Ectoderm Cultured Cells (E012)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E013
|
0 |
6 |
216.21 MB |
Cell-type specific FitCons scores for hESC Derived CD56+ Mesoderm Cultured Cells (E013)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E014
|
0 |
6 |
227.54 MB |
Cell-type specific FitCons scores for HUES48 Cells (E014)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E015
|
0 |
6 |
230.71 MB |
Cell-type specific FitCons scores for HUES6 Cells (E015)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E016
|
0 |
6 |
225.76 MB |
Cell-type specific FitCons scores for HUES64 Cells (E016)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E017
|
0 |
6 |
218.4 MB |
Cell-type specific FitCons scores for Liver (E017)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E018
|
0 |
6 |
234.95 MB |
Cell-type specific FitCons scores for iPS-15b Cells (E018)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E019
|
0 |
6 |
237.22 MB |
Cell-type specific FitCons scores for iPS-18 Cells (E019)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E020
|
0 |
6 |
240.49 MB |
Cell-type specific FitCons scores for iPS-20b Cells (E020)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E021
|
0 |
6 |
214.32 MB |
Cell-type specific FitCons scores for iPS DF 6.9 Cells (E021)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E022
|
0 |
6 |
199.62 MB |
Cell-type specific FitCons scores for iPS DF 19.11 Cells (E022)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E023
|
0 |
6 |
214.67 MB |
Cell-type specific FitCons scores for Mesenchymal Stem Cell Derived Adipocyte Cultured Cells (E023)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E024
|
0 |
6 |
223.0 MB |
Cell-type specific FitCons scores for ES-UCSF4 Cells (E024)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E025
|
0 |
6 |
228.85 MB |
Cell-type specific FitCons scores for Adipose Derived Mesenchymal Stem Cell Cultured Cells (E025)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E026
|
0 |
6 |
212.77 MB |
Cell-type specific FitCons scores for Bone Marrow Derived Cultured Mesenchymal Stem Cells (E026)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E027
|
0 |
6 |
213.05 MB |
Cell-type specific FitCons scores for Breast Myoepithelial Primary Cells (E027)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E028
|
0 |
6 |
213.67 MB |
Cell-type specific FitCons scores for Breast variant Human Mammary Epithelial Cells (vHMEC) (E028)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E029
|
0 |
6 |
220.18 MB |
Cell-type specific FitCons scores for Primary monocytes from peripheral blood (E029)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E030
|
0 |
6 |
234.5 MB |
Cell-type specific FitCons scores for Primary neutrophils from peripheral blood (E030)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E031
|
0 |
6 |
263.52 MB |
Cell-type specific FitCons scores for Primary B cells from cord blood (E031)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E032
|
0 |
6 |
234.78 MB |
Cell-type specific FitCons scores for Primary B cells from peripheral blood (E032)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E033
|
0 |
6 |
252.22 MB |
Cell-type specific FitCons scores for Primary T cells from cord blood (E033)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E034
|
0 |
6 |
223.65 MB |
Cell-type specific FitCons scores for Primary T cells from peripheral blood (E034)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E035
|
0 |
6 |
233.55 MB |
Cell-type specific FitCons scores for Primary hematopoietic stem cells (E035)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E036
|
0 |
6 |
211.79 MB |
Cell-type specific FitCons scores for Primary hematopoietic stem cells short term culture Cells (E036)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E037
|
0 |
6 |
221.83 MB |
Cell-type specific FitCons scores for Primary T helper memory cells from peripheral blood 2 (E037)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E038
|
0 |
6 |
213.5 MB |
Cell-type specific FitCons scores for Primary T helper naive cells from peripheral blood (E038)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E039
|
0 |
6 |
231.12 MB |
Cell-type specific FitCons scores for Primary T helper naive cells from peripheral blood (E039)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E040
|
0 |
6 |
262.6 MB |
Cell-type specific FitCons scores for Primary T helper memory cells from peripheral blood 1 (E040)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E041
|
0 |
6 |
230.91 MB |
Cell-type specific FitCons scores for Primary T helper cells PMA-I stimulated (E041)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E042
|
0 |
6 |
240.82 MB |
Cell-type specific FitCons scores for Primary T helper 17 cells PMA-I stimulated (E042)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E043
|
0 |
6 |
247.45 MB |
Cell-type specific FitCons scores for Primary T helper cells from peripheral blood (E043)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E044
|
0 |
6 |
245.95 MB |
Cell-type specific FitCons scores for Primary T regulatory cells from peripheral blood (E044)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E045
|
0 |
6 |
235.57 MB |
Cell-type specific FitCons scores for Primary T cells effector/memory enriched from peripheral blood (E045)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E046
|
0 |
6 |
230.03 MB |
Cell-type specific FitCons scores for Primary Natural Killer cells from peripheral blood (E046)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E047
|
0 |
6 |
230.97 MB |
Cell-type specific FitCons scores for Primary T CD8+ naive cells from peripheral blood (E047)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E048
|
0 |
6 |
234.84 MB |
Cell-type specific FitCons scores for Primary T CD8+ memory cells from peripheral blood (E048)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E049
|
0 |
6 |
211.48 MB |
Cell-type specific FitCons scores for Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells (E049)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E050
|
0 |
6 |
210.32 MB |
Cell-type specific FitCons scores for Primary hematopoietic stem cells G-CSF-mobilized Female (E050)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E051
|
0 |
6 |
252.44 MB |
Cell-type specific FitCons scores for Primary hematopoietic stem cells G-CSF-mobilized Male (E051)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E052
|
0 |
6 |
223.16 MB |
Cell-type specific FitCons scores for Muscle Satellite Cultured Cells (E052)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E053
|
0 |
6 |
214.04 MB |
Cell-type specific FitCons scores for Cortex derived primary cultured neurospheres (E053)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E054
|
0 |
6 |
207.21 MB |
Cell-type specific FitCons scores for Ganglion Eminence derived primary cultured neurospheres (E054)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E055
|
0 |
6 |
212.6 MB |
Cell-type specific FitCons scores for Foreskin Fibroblast Primary Cells skin01 (E055)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E056
|
0 |
6 |
210.57 MB |
Cell-type specific FitCons scores for Foreskin Fibroblast Primary Cells skin02 (E056)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E057
|
0 |
6 |
212.04 MB |
Cell-type specific FitCons scores for Foreskin Keratinocyte Primary Cells skin02 (E057)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E058
|
0 |
6 |
213.35 MB |
Cell-type specific FitCons scores for Foreskin Keratinocyte Primary Cells skin03 (E058)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E059
|
0 |
6 |
213.1 MB |
Cell-type specific FitCons scores for Foreskin Melanocyte Primary Cells skin01 (E059)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E061
|
0 |
6 |
213.52 MB |
Cell-type specific FitCons scores for Foreskin Melanocyte Primary Cells skin03 (E061)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E062
|
0 |
6 |
204.92 MB |
Cell-type specific FitCons scores for Primary mononuclear cells from peripheral blood (E062)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E063
|
0 |
6 |
203.35 MB |
Cell-type specific FitCons scores for Adipose Nuclei (E063)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E065
|
0 |
6 |
211.95 MB |
Cell-type specific FitCons scores for Aorta (E065)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E066
|
0 |
6 |
221.49 MB |
Cell-type specific FitCons scores for Liver (E066)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E067
|
0 |
6 |
208.66 MB |
Cell-type specific FitCons scores for Brain Angular Gyrus (E067)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E068
|
0 |
6 |
214.79 MB |
Cell-type specific FitCons scores for E68 Brain Anterior Caudate (E068)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E069
|
0 |
6 |
209.34 MB |
Cell-type specific FitCons scores for Brain Cingulate Gyrus (E069)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E070
|
0 |
6 |
208.97 MB |
Cell-type specific FitCons scores for Brain Germinal Matrix (E070)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E071
|
0 |
6 |
203.49 MB |
Cell-type specific FitCons scores for Brain Hippocampus Middle (E071)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E072
|
0 |
6 |
206.07 MB |
Cell-type specific FitCons scores for Brain Inferior Temporal Lobe (E072)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E073
|
0 |
6 |
214.21 MB |
Cell-type specific FitCons scores for Brain_Dorsolateral_Prefrontal_Cortex (E073)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E074
|
0 |
6 |
209.33 MB |
Cell-type specific FitCons scores for Brain Substantia Nigra (E074)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E075
|
0 |
6 |
204.3 MB |
Cell-type specific FitCons scores for Colonic Mucosa (E075)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E076
|
0 |
6 |
231.19 MB |
Cell-type specific FitCons scores for Colon Smooth Muscle (E076)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E077
|
0 |
6 |
230.97 MB |
Cell-type specific FitCons scores for Duodenum Mucosa (E077)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E078
|
0 |
6 |
207.21 MB |
Cell-type specific FitCons scores for Duodenum Smooth Muscle (E078)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E079
|
0 |
6 |
198.02 MB |
Cell-type specific FitCons scores for Esophagus (E079)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E080
|
0 |
6 |
206.79 MB |
Cell-type specific FitCons scores for Fetal Adrenal Gland (E080)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E081
|
0 |
6 |
221.55 MB |
Cell-type specific FitCons scores for Fetal Brain Male (E081)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E082
|
0 |
6 |
223.58 MB |
Cell-type specific FitCons scores for Fetal Brain Female (E082)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E083
|
0 |
6 |
224.11 MB |
Cell-type specific FitCons scores for Fetal Heart (E083)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E084
|
0 |
6 |
225.24 MB |
Cell-type specific FitCons scores for Fetal Intestine Large (E084)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E085
|
0 |
6 |
229.31 MB |
Cell-type specific FitCons scores for Fetal Intestine Small (E085)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E086
|
0 |
6 |
231.56 MB |
Cell-type specific FitCons scores for Fetal Kidney (E086)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E087
|
0 |
6 |
226.19 MB |
Cell-type specific FitCons scores for Pancreatic Islets (E087)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E088
|
0 |
6 |
219.94 MB |
Cell-type specific FitCons scores for Fetal Lung (E088)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E089
|
0 |
6 |
209.56 MB |
Cell-type specific FitCons scores for Fetal Muscle Trunk (E089)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E090
|
0 |
6 |
205.42 MB |
Cell-type specific FitCons scores for Fetal Muscle Leg (E090)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E091
|
0 |
6 |
194.41 MB |
Cell-type specific FitCons scores for Placenta (E091)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E092
|
0 |
6 |
209.39 MB |
Cell-type specific FitCons scores for Fetal Stomach (E092)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E093
|
0 |
6 |
212.49 MB |
Cell-type specific FitCons scores for Fetal Thymus (E093)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E094
|
0 |
6 |
206.44 MB |
Cell-type specific FitCons scores for Gastric (E094)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E095
|
0 |
6 |
180.93 MB |
Cell-type specific FitCons scores for E68 Left Ventricle (E095)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E096
|
0 |
6 |
192.91 MB |
Cell-type specific FitCons scores for Lung (E096)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E097
|
0 |
6 |
218.9 MB |
Cell-type specific FitCons scores for Ovary (E097)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E098
|
0 |
6 |
206.07 MB |
Cell-type specific FitCons scores for Pancreas (E098)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E099
|
0 |
6 |
219.45 MB |
Cell-type specific FitCons scores for Placenta Amnion (E099)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E100
|
0 |
6 |
197.09 MB |
Cell-type specific FitCons scores for Psoas Muscle (E100)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E101
|
0 |
6 |
224.7 MB |
Cell-type specific FitCons scores for Rectal Mucosa Donor 29 (E101)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E102
|
0 |
6 |
220.15 MB |
Cell-type specific FitCons scores for Rectal Mucosa Donor 31 (E102)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E103
|
0 |
6 |
219.33 MB |
Cell-type specific FitCons scores for Rectal Smooth Muscle (E103)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E104
|
0 |
6 |
205.04 MB |
Cell-type specific FitCons scores for Right Atrium (E104)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E105
|
0 |
6 |
202.39 MB |
Cell-type specific FitCons scores for Right Ventricle (E105)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E106
|
0 |
6 |
225.57 MB |
Cell-type specific FitCons scores for Sigmoid Colon (E106)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E107
|
0 |
6 |
221.47 MB |
Cell-type specific FitCons scores for Skeletal Muscle Male (E107)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E108
|
0 |
6 |
223.37 MB |
Cell-type specific FitCons scores for Skeletal Muscle Female (E108)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E109
|
0 |
6 |
203.11 MB |
Cell-type specific FitCons scores for Small Intestine (E109)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E110
|
0 |
6 |
220.29 MB |
Cell-type specific FitCons scores for Stomach Mucosa (E110)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E111
|
0 |
6 |
205.23 MB |
Cell-type specific FitCons scores for Stomach Smooth Muscle (E111)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E112
|
0 |
6 |
219.86 MB |
Cell-type specific FitCons scores for Thymus (E112)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E113
|
0 |
6 |
219.14 MB |
Cell-type specific FitCons scores for Spleen (E113)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E114
|
0 |
6 |
214.49 MB |
Cell-type specific FitCons scores for Fetal NH-A Astrocytes Primary Cells (E114)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E115
|
0 |
6 |
214.29 MB |
Cell-type specific FitCons scores for Dnd41 TCell Leukemia Cell Line (E115)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E116
|
0 |
6 |
234.45 MB |
Cell-type specific FitCons scores for GM12878 Lymphoblastoid Cells (E116)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E117
|
0 |
6 |
212.66 MB |
Cell-type specific FitCons scores for Monocytes-CD14+ RO01746 Primary Cells (E117)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E118
|
0 |
6 |
213.16 MB |
Cell-type specific FitCons scores for HepG2 Hepatocellular Carcinoma Cell Line (E118)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E119
|
0 |
6 |
203.69 MB |
Cell-type specific FitCons scores for HMEC Mammary Epithelial Primary Cells (E119)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E120
|
0 |
6 |
232.41 MB |
Cell-type specific FitCons scores for HSMM Skeletal Muscle Myoblasts Cells (E120)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E121
|
0 |
6 |
214.79 MB |
Cell-type specific FitCons scores for HSMM cell derived Skeletal Muscle Myotubes Cells (E121)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E122
|
0 |
6 |
206.16 MB |
Cell-type specific FitCons scores for HUVEC Umbilical Vein Endothelial Primary Cells (E122)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E123
|
0 |
6 |
228.66 MB |
Cell-type specific FitCons scores for K562 Leukemia Cells (E123)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E124
|
0 |
6 |
228.02 MB |
Cell-type specific FitCons scores for Monocytes-CD14+ RO01746 Primary Cells (E124)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E125
|
0 |
6 |
224.44 MB |
Cell-type specific FitCons scores for NH-A Astrocytes Primary Cells (E125)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E126
|
0 |
6 |
221.34 MB |
Cell-type specific FitCons scores for NHDF-Ad Adult Dermal Fibroblast Primary Cells (E126)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E127
|
0 |
6 |
211.12 MB |
Cell-type specific FitCons scores for NHEK-Epidermal Keratinocyte Primary Cells (E127)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E128
|
0 |
6 |
208.33 MB |
Cell-type specific FitCons scores for HSMM Skeletal Muscle Myoblasts Cells Amnion (E128)
|
| position_score |
hg19/scores/fitCons2/FitCons2_E129
|
0 |
6 |
227.88 MB |
Cell-type specific FitCons scores for Osteoblast Primary Cells (E129)
|
| position_score |
hg19/scores/phastCons46_placentals
|
0 |
8 |
10.55 GB |
phastCons46_placentals is a conservation score based on the
placental mammal subset of species
|
| position_score |
hg19/scores/phastCons46_primates
|
0 |
8 |
14.02 GB |
phastCons46_primates is a conservation score based on the
primates subset of species
|
| position_score |
hg19/scores/phastCons46_vertebrates
|
0 |
8 |
10.81 GB |
phastCons46_vertebrates is a conservation score based on a multiple alignments
of 45 vertebrate genomes to the human genome.
|
| position_score |
hg19/scores/phyloP46_placentals
|
0 |
8 |
14.62 GB |
phyloP (phylogenetic p-values) conservation score based on the multiple
alignments of the placental mammal species
|
| position_score |
hg19/scores/phyloP46_primates
|
0 |
8 |
10.81 GB |
phyloP (phylogenetic p-values) conservation score based on the multiple
alignments of the primate species
|
| position_score |
hg19/scores/phyloP46_vertebrates
|
0 |
8 |
14.72 GB |
phyloP (phylogenetic p-values) conservation score based on the multiple
alignments of 46 vertebrate genomes
|
| allele_score |
hg19/variant_frequencies/gnomAD_v2.1.1/exomes
|
0 |
32 |
959.44 MB |
gnomAD exomes v2.1.1 variants build from ~260,000 whole exome samples
published by the Broad Institute.
|
| allele_score |
hg19/variant_frequencies/gnomAD_v2.1.1/genomes
|
0 |
31 |
12.27 GB |
gnomAD genomes v2.1.1 variants build from ~32,000 whole genome sequencing samples
published by the Broad Institute.
|
| gene_score |
hg38/enrichment/coding_length_ref_gene_v20170601
|
0 |
5 |
158.47 KB |
Coding length enrichment background
using refGene gene models for HG38 from 20170601
|
| gene_score |
hg38/enrichment/ur_synonymous_AGRE_WG38_859
|
0 |
5 |
175.95 KB |
Ultra rare synonymous enrichment background build from AGRE WGS CSHL.
|
| gene_score |
hg38/enrichment/ur_synonymous_SFARI_SSC_WGS_2
|
0 |
5 |
187.88 KB |
Ultra rare synonymous enrichment background build from SFARI SSC WGS NYGC.
|
| gene_score |
hg38/enrichment/ur_synonymous_SFARI_SSC_WGS_CSHL
|
0 |
5 |
187.34 KB |
Ultra rare synonymous enrichment background build from SFARI SSC WGS NYGC.
|
| gene_score |
hg38/enrichment/ur_synonymous_iWES_v1_1
|
0 |
5 |
194.04 KB |
Ultra rare synonymous enrichment background build from SPARK iWES v1.1.
|
| gene_score |
hg38/enrichment/ur_synonymous_iWES_v2
|
0 |
5 |
197.14 KB |
Ultra rare synonymous enrichment background build from SPARK iWES v2.
|
| gene_score |
hg38/enrichment/ur_synonymous_iWGS_v1_1
|
0 |
5 |
194.19 KB |
Ultra rare synonymous enrichment background build from SPARK iWGS v1.1.
|
| gene_score |
hg38/enrichment/ur_synonymous_w1202s766e611_liftover
|
0 |
5 |
179.58 KB |
Ultra rare synonymous enrichment background build from SFARI SSC WES CSHL liftover.
|
| gene_models |
hg38/gene_models/GENCODE/34/basic/ALL
|
0 |
8 |
36.64 MB |
GENCODE 34, basic gene annotation on the reference chromosomes, scaffolds, assembly patches and alternate loci (haplotypes)
|
| gene_models |
hg38/gene_models/GENCODE/34/basic/CHR
|
0 |
8 |
33.62 MB |
GENCODE 34, basic gene annotation on the reference chromosomes only
|
| gene_models |
hg38/gene_models/GENCODE/34/comprehensive/ALL
|
0 |
8 |
60.26 MB |
GENCODE 34, comprehensive gene annotation on the reference chromosomes, scaffolds, assembly patches and alternate loci (haplotypes)
|
| gene_models |
hg38/gene_models/GENCODE/34/comprehensive/CHR
|
0 |
8 |
55.62 MB |
GENCODE 34, comprehensive gene annotation on the reference chromosomes only
|
| gene_models |
hg38/gene_models/GENCODE/34/comprehensive/PRI
|
0 |
8 |
55.63 MB |
GENCODE 34, comprehensive gene annotation on the primary assembly (chromosomes and scaffolds) sequence regions
|
| gene_models |
hg38/gene_models/GENCODE/46/basic/ALL
|
0 |
8 |
41.47 MB |
GENCODE 46, basic gene annotation on the reference chromosomes, scaffolds, assembly patches and alternate loci (haplotypes)
|
| gene_models |
hg38/gene_models/GENCODE/46/basic/CHR
|
0 |
8 |
38.04 MB |
GENCODE 46, basic gene annotation on the reference chromosomes only
|
| gene_models |
hg38/gene_models/GENCODE/46/basic/PRI
|
0 |
8 |
38.05 MB |
GENCODE 46, basic gene annotation on the primary assembly (chromosomes and scaffolds) sequence regions
|
| gene_models |
hg38/gene_models/GENCODE/46/comprehensive/ALL
|
0 |
8 |
69.71 MB |
GENCODE 46, comprehensive gene annotation on the reference chromosomes, scaffolds, assembly patches and alternate loci (haplotypes)
|
| gene_models |
hg38/gene_models/GENCODE/46/comprehensive/CHR
|
0 |
8 |
64.42 MB |
GENCODE 46, comprehensive gene annotation on the reference chromosomes only
|
| gene_models |
hg38/gene_models/GENCODE/46/comprehensive/PRI
|
0 |
8 |
64.44 MB |
GENCODE 46, comprehensive gene annotation on the primary assembly (chromosomes and scaffolds) sequence regions
|
| gene_models |
hg38/gene_models/MANE/0.5
|
0 |
8 |
5.51 MB |
MANE gene model version 0.5
|
| gene_models |
hg38/gene_models/MANE/0.6
|
0 |
8 |
6.09 MB |
MANE gene model version 0.6
|
| gene_models |
hg38/gene_models/MANE/0.7
|
0 |
8 |
6.43 MB |
MANE gene model version 0.7
|
| gene_models |
hg38/gene_models/MANE/0.8
|
0 |
8 |
6.94 MB |
MANE gene model version 0.8
|
| gene_models |
hg38/gene_models/MANE/0.9
|
0 |
8 |
7.48 MB |
MANE gene model version 0.9
|
| gene_models |
hg38/gene_models/MANE/0.91
|
0 |
8 |
8.39 MB |
MANE gene model version 0.91
|
| gene_models |
hg38/gene_models/MANE/0.92
|
0 |
8 |
8.71 MB |
MANE gene model version 0.92
|
| gene_models |
hg38/gene_models/MANE/0.93
|
0 |
8 |
9.18 MB |
MANE gene model version 0.93
|
| gene_models |
hg38/gene_models/MANE/0.95
|
0 |
8 |
9.65 MB |
MANE gene model version 0.95
|
| gene_models |
hg38/gene_models/MANE/1.0
|
0 |
8 |
9.92 MB |
MANE gene model version 1.0
|
| gene_models |
hg38/gene_models/MANE/1.1
|
0 |
8 |
10.82 MB |
MANE gene model version 1.1
|
| gene_models |
hg38/gene_models/MANE/1.2
|
0 |
8 |
10.86 MB |
MANE gene model version 1.2
|
| gene_models |
hg38/gene_models/MANE/1.3
|
0 |
8 |
10.88 MB |
MANE gene model version 1.3
|
| gene_models |
hg38/gene_models/refGene_v20170601
|
0 |
5 |
5.45 MB |
refSeq gene models for HG38 from 20170601
|
| gene_models |
hg38/gene_models/refSeq_v20200330
|
0 |
5 |
4.19 MB |
refSeq gene models for HG38 from 2020-03
Default gene models used by GPF for HG38.
|
| gene_models |
hg38/gene_models/refSeq_v20240129
|
0 |
5 |
7.03 MB |
refSeq gene models for HG38 from 2024-01-29
|
| genome |
hg38/genomes/GRCh38-hg38
|
0 |
3374 |
3.04 GB |
HG38 reference genome
|
| genome |
hg38/genomes/GRCh38.p13
|
0 |
646 |
3.09 GB |
Nucleotide sequence of the GRCh38.p13 genome assembly
|
| genome |
hg38/genomes/GRCh38.p14
|
0 |
715 |
3.95 GB |
Nucleotide sequence of the GRCh38.p14 genome assembly
|
| np_score |
hg38/scores/AlphaMissense
|
0 |
13 |
1.17 GB |
Functional impact of mutations on protein function
|
| np_score |
hg38/scores/CADD_v1.4
|
0 |
18 |
79.42 GB |
CADD (Combined Annotation Dependent Depletion score) predicts the potential impact of a SNP
|
| np_score |
hg38/scores/CADD_v1.6
|
0 |
12 |
80.65 GB |
CADD (Combined Annotation Dependent Depletion score) predicts the potential impact of a SNP
|
| np_score |
hg38/scores/CADD_v1.7
|
0 |
10 |
81.47 GB |
CADD (Combined Annotation Dependent Depletion score) predicts the potential impact of a SNP
|
| allele_score |
hg38/scores/clinvar_20221105
|
0 |
44 |
115.33 MB |
Measure used to assess the clinical significance of genetic variants
|
| position_score |
hg38/scores/phastCons100way
|
0 |
6 |
5.48 GB |
Conservation score based on the multiple alignment of 100 species
|
| position_score |
hg38/scores/phastCons20way
|
0 |
6 |
6.63 GB |
Conservation score based on the multiple alignment of 20 species
|
| position_score |
hg38/scores/phastCons30way
|
0 |
6 |
6.59 GB |
Conservation score based on the multiple alignment of 30 species
|
| position_score |
hg38/scores/phastCons7way
|
0 |
6 |
7.19 GB |
Conservation score based on the multiple alignment of 7 species
|
| position_score |
hg38/scores/phyloP100way
|
0 |
6 |
9.19 GB |
Conservation score based on the multiple alignment of 100 species
|
| position_score |
hg38/scores/phyloP20way
|
0 |
6 |
7.33 GB |
Conservation score based on the multiple alignment of 20 species
|
| position_score |
hg38/scores/phyloP30way
|
0 |
6 |
7.82 GB |
Conservation score based on the multiple alignment of 30 species
|
| position_score |
hg38/scores/phyloP7way
|
0 |
6 |
5.25 GB |
Conservation score based on the multiple alignment of 7 species
|
| allele_score |
hg38/variant_frequencies/SSC_WG38_CSHL_2380
|
0 |
12 |
783.71 MB |
Exported from SFARI_SSC_WGS_CSHL using `gpf_validation_data/data_hg38/exports/SFARI_SSC_WGS_CSHL_frequency`.
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/exomes/ALL
|
0 |
21 |
1.32 GB |
gnomAD v4.1.0 exome variants (ALL)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/exomes/afr
|
0 |
21 |
172.93 MB |
gnomAD v4.1.0 exome variants (African/African American)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/exomes/amr
|
0 |
21 |
171.3 MB |
gnomAD v4.1.0 exome variants (Ad Mixed American)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/exomes/asj
|
0 |
21 |
56.02 MB |
gnomAD v4.1.0 exome variants (Ashkenazi Jewish)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/exomes/eas
|
0 |
21 |
149.24 MB |
gnomAD v4.1.0 exome variants (East Asian)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/exomes/fin
|
0 |
21 |
90.37 MB |
gnomAD v4.1.0 exome variants (Finnish)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/exomes/mid
|
0 |
21 |
62.78 MB |
gnomAD v4.1.0 exome variants (Middle Eastern)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/exomes/nfe
|
0 |
21 |
916.58 MB |
gnomAD v4.1.0 exome variants (Non-Finnish European)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/exomes/sas
|
0 |
21 |
277.15 MB |
gnomAD v4.1.0 exome variants (South Asian)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/genomes/ALL
|
0 |
21 |
10.47 GB |
gnomAD v4.1.0 genome variants (ALL)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/genomes/afr
|
0 |
21 |
5.98 GB |
gnomAD v4.1.0 genome variants (African/African American)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/genomes/amr
|
0 |
21 |
4.0 GB |
gnomAD v4.1.0 genome variants (Ad Mixed American)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/genomes/asj
|
0 |
21 |
2.27 GB |
gnomAD v4.1.0 genome variants (Ashkenazi Jewish)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/genomes/eas
|
0 |
21 |
3.03 GB |
gnomAD v4.1.0 genome variants (East Asian)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/genomes/fin
|
0 |
21 |
2.86 GB |
gnomAD v4.1.0 genome variants (Finnish)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/genomes/mid
|
0 |
21 |
1.93 GB |
gnomAD v4.1.0 genome variants (Middle Eastern)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/genomes/nfe
|
0 |
21 |
5.75 GB |
gnomAD v4.1.0 genome variants (Non-Finnish European)
|
| allele_score |
hg38/variant_frequencies/gnomAD_4.1.0/genomes/sas
|
0 |
21 |
3.04 GB |
gnomAD v4.1.0 genome variants (South Asian)
|
| allele_score |
hg38/variant_frequencies/gnomAD_v2.1.1_liftover/exomes
|
0 |
35 |
928.26 MB |
Liftover of gnomAD exomes v2.1.1 to hg38.
|
| allele_score |
hg38/variant_frequencies/gnomAD_v2.1.1_liftover/genomes
|
0 |
35 |
11.53 GB |
Liftover of gnomAD genomes v2.1.1 to hg38.
|
| allele_score |
hg38/variant_frequencies/gnomAD_v3/genomes
|
0 |
18 |
17.64 GB |
gnomAD v3.0 variants built from ~150,000 samples with whole genome sequence data.
|
| liftover_chain |
liftover/hg19ToHg38
|
0 |
6 |
450.24 KB |
Liftover Chain Hg19 to Hg38
|
| liftover_chain |
liftover/hg38ToHg19
|
0 |
6 |
2.4 MB |
Liftover Chain Hg38 to Hg19
|
| annotation_pipeline |
pipeline/Clinical_annotation
|
0 |
3 |
3.39 KB |
Clinical Annotation Pipeline
|
| annotation_pipeline |
pipeline/GPF-SFARI_annotation
|
0 |
3 |
2.9 KB |
GPF-SFARI Production Annotation Pipeline
|