Resource
| Id | hs1/gene_models/ncbiRefSeq_20250529 |
|---|---|
| Type | gene_models |
| Version | 0 |
| Summary | NCBI RefSeq gene models for the T2T-CHM13v2.0/hs1 genome assembly from UCSC |
| Description |
Gene models for the T2T-CHM13v2.0/hs1 genome assembly based on the NCBI RefSeq annotation distributed by UCSC. The resource provides transcript and exon annotations in GTF format using hs1 genomic coordinates and UCSC-style chromosome names. The source file was downloaded from the UCSC goldenPath hs1 bigZips genes directory. The UCSC file listing reported a last-modified date of 2023-05-29. Downloaded on 6/12/2026 https://hgdownload.soe.ucsc.edu/goldenPath/hs1/bigZips/genes/hs1.ncbiRefSeq.gtf.gz Processing Details: | |
| Labels |
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Configuration
Gene models file: hs1.ncbiRefSeq.txt.gz
Format: default
Statistics
Chromosome statistics
| Transcript number | Protein coding transcript number | Gene number | Protein coding gene number | |
|---|---|---|---|---|
| Global | 194,234 | 130,369 | 57,514 | 20,738 |
| chrY | 5,365 | 468 | 1,382 | 105 |
| chrX | 6,161 | 4,268 | 2,259 | 853 |
| chr22 | 4,079 | 2,849 | 1,310 | 546 |
| chr21 | 2,398 | 1,371 | 992 | 232 |
| chr20 | 4,655 | 3,143 | 1,394 | 546 |
| chr19 | 9,562 | 7,456 | 2,531 | 1,413 |
| chr18 | 3,653 | 2,519 | 1,022 | 283 |
| chr17 | 9,562 | 7,243 | 2,509 | 1,163 |
| chr16 | 7,274 | 5,258 | 2,045 | 859 |
| chr15 | 6,631 | 4,289 | 2,072 | 609 |
| chr14 | 6,373 | 4,254 | 2,216 | 904 |
| chr13 | 4,400 | 2,456 | 1,768 | 351 |
| chr12 | 10,046 | 7,232 | 2,574 | 1,021 |
| chr11 | 10,374 | 7,498 | 2,995 | 1,302 |
| chr10 | 8,561 | 5,997 | 2,245 | 746 |
| chr9 | 8,135 | 5,388 | 2,327 | 787 |
| chr8 | 7,545 | 5,020 | 2,310 | 771 |
| chr7 | 9,083 | 5,941 | 2,891 | 1,059 |
| chr6 | 9,654 | 6,200 | 3,081 | 1,044 |
| chr5 | 8,386 | 5,526 | 2,691 | 918 |
| chr4 | 8,173 | 5,291 | 2,551 | 793 |
| chr3 | 11,820 | 8,404 | 3,090 | 1,059 |
| chr2 | 14,093 | 9,513 | 3,991 | 1,334 |
| chr1 | 18,251 | 12,785 | 5,318 | 2,060 |
Files
| Filename | Size | md5 |
|---|---|---|
| build.sh | 82.0 B | 2b21c432a1e473d130bec66841e2fe4e |
| genomic_resource.yaml | 891.0 B | 0f9c8fc3f9554c5a64781758f9b7c63a |
| hs1.ncbiRefSeq.gtf.gz | 37.45 MB | bd7063efcbfed4774d9be42db8173a6e |
| hs1.ncbiRefSeq.txt.gz | 7.75 MB | e9addf0a43fb0c6485f290232f85c988 |
| statistics/ |