hg38/scores/phastCons20way


Score file:

phastCons20way.bedGraph.gz

File format: tabix

chrom column index in file: 0

pos_begin column index in file: 1

pos_end column index in file: 2

Score definitions:

Histograms:

phastCons20way

phastCons20way

{'description': '## phastCons20way\n\nThis file is from:\n\n http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons20way/README.txt\n\nThis score contains compressed phastCons scores for multiple alignments\nof 19 genome sequences to the human genome.\n\nFor a description of the phastCons fixed step wiggle data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\nThe multiple alignments and methods description are at:\nhttp://hgdownload.cse.ucsc.edu/goldenPath/hg38/multiz20way/\n\nFor more information about this data, see the track\ndescription for the Conservation track:\n http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=tarSyr2&g=cons20way\n\nAssemblies used in these alignments: (alignment\n type)\n\nHuman - Homo sapiens Dec. 2013 (GRCh38/hg38) reference\n\nBaboon - Papio anubis Mar. 2012 (Baylor Panu2.0/papAnu2) syntenic\nBushbaby - Otolemur garnettii Mar. 2011 (Broad/otoGar3) reciprocal best\nBonobo - Pan paniscus May. 2012 (Max-Planck/panPan1) reciprocal best\nChimp - Pan troglodytes Feb. 2011 (CSAC 2.1.4/panTro4) syntenic\nCrab-eating macaque - Macaca fascicularis\n Jun 2013 (Macacafascicularis5.0/macFas5) syntenic\nGibbon - Nomascus leucogenys Oct. 2012 (GGSC Nleu3.0/nomLeu3) syntenic\nGolden snub-nosed monkey - Rhinopithecus roxellana\n Oct. 2014 (Rroxv1/rhiRox1) reciprocal best\nGorilla - Gorilla gorilla gorilla May 2011 (gorGor3.1/gorGor3) reciprocal best\nGreen monkey - Chlorocebus sabaeus\n Mar. 2014 (Chlorocebussabeus 1.1/chlSab2) syntenic\nMarmoset - Callithrix jacchus Mar. 2009 (WUGSC 3.2/calJac3) syntenic\nMouse lemur - Microcebus murinus Jul. 2007 (Broad/micMur1) reciprocal best\nOrangutan - Pongo pygmaeus abelii Jul. 2007 (WUGSC 2.0.2/ponAbe2) syntenic\nProboscis monkey - Nasalis larvatus\n Nov. 2014 (Charlie1.0/nasLar1) reciprocal best\nRhesus - Macaca mulatta Oct. 2010 (BGI CR1.0/rheMac3) syntenic\nSquirrel monkey - Saimiri boliviensis Oct. 2011 (Broad/saiBol1) reciprocal best\nTarsier - Tarsius syrichta\n Sep. 2013 (Tarsiussyrichta-2.0.1/tarSyr2) reciprocal best\nTree shrew - Tupaia belangeri Dec. 2006 (Broad/tupBel1) reciprocal best\nMouse - Mus musculus Dec. 2011 (GRCm38/mm10) syntenic\nDog - Canis lupus familiaris Sep. 2011 (Broad CanFam3.1/canFam3) syntenic\n', 'labels': {'referencegenome': 'hg38/genomes/GRCh38-hg38'}}