hg38/scores/phastCons100way

{'description': "## phastConst100way\n\nThis file is from:\n\n http://hgdownload.cse.ucsc.edu/goldenPath/hg38/phastCons100way/README.txt\n\nThis score contains compressed phastCons scores for multiple alignments\nof 99 vertebrate genomes to the human genome.\n\nFor a description of the phastCons fixed step wiggle data file format, see:\nhttp://genome.ucsc.edu/goldenPath/help/phastCons.html\n\n\nAssemblies used in these alignments:\n\n== Primate subset ==\nHuman Homo sapiens Dec 2013 GRCh38/hg38 Reference species\nChimp Pan troglodytes Feb 2011 CSAC 2.1.4/panTro4 Syntenic net \nGorilla Gorilla gorilla gorilla May 2011 gorGor3.1/gorGor3 Reciprocal best net \nOrangutan Pongo pygmaeus abelii July 2007 WUGSC 2.0.2/ponAbe2 Reciprocal best net \nGibbon Nomascus leucogenys Oct 2012 GGSC Nleu3.0/nomLeu3 Syntenic net \nRhesus Macaca mulatta Oct 2010 BGI CR1.0/rheMac3 Syntenic net \nCrab-eating macaque Macaca fascicularis Jun 2013 Macacafascicularis5.0/macFas5 Syntenic net \nBaboon Papio hamadryas Mar 2012 Baylor Panu2.0/papAnu2 Reciprocal best net \nGreen monkey Chlorocebus sabaeus Mar 2014 Chlorocebussabeus 1.1/chlSab2 Syntenic net \nMarmoset Callithrix jacchus Mar 2009 WUGSC 3.2/calJac3 Syntenic net \nSquirrel monkey Saimiri boliviensis Oct 2011 Broad/saiBol1 Syntenic net \nBushbaby Otolemur garnettii Mar 2011 Broad/otoGar3 Syntenic net \n\n== Euarchontoglires subset ==\nChinese tree shrew Tupaia chinensis Jan 2013 TupChi1.0/tupChi1 Syntenic net \nSquirrel Spermophilus tridecemlineatus Nov 2011 Broad/speTri2 Syntenic net \nLesser Egyptian jerboa Jaculus jaculus May 2012 JacJac1.0/jacJac1 Syntenic net \nPrairie vole Microtus ochrogaster Oct 2012 MicOch1.0/micOch1 Syntenic net \nChinese hamster Cricetulus griseus Jul 2013 Cgriseusv1.0/criGri1 Syntenic net \nGolden hamster Mesocricetus auratus Mar 2013 MesAur1.0/mesAur1 Syntenic net \nMouse Mus musculus Dec 2011 GRCm38/mm10 Syntenic net \nRat Rattus norvegicus Jul 2014 RGSC 6.0/rn6 Syntenic net \nNaked mole-rat Heterocephalus glaber Jan 2012 Broad HetGlafemale1.0/hetGla2 Syntenic net \nGuinea pig Cavia porcellus Feb 2008 Broad/cavPor3 Syntenic net \nChinchilla Chinchilla lanigera May 2012 ChiLan1.0/chiLan1 Syntenic net \nBrush-tailed rat Octodon degus Apr 2012 OctDeg1.0/octDeg1 Syntenic net \nRabbit Oryctolagus cuniculus Apr 2009 Broad/oryCun2 Syntenic net \nPika Ochotona princeps May 2012 OchPri3.0/ochPri3 Syntenic net \n\n== Laurasiatheria subset ==\nPig Sus scrofa Aug 2011 SGSC Sscrofa10.2/susScr3 Syntenic net \nAlpaca Vicugna pacos Mar 2013 Vicugnapacos-2.0.1/vicPac2 Syntenic net \nBactrian camel Camelus ferus Dec 2011 CB1/camFer1 Syntenic net \nDolphin Tursiops truncatus Oct 2011 Baylor Ttru1.4/turTru2 Reciprocal best net \nKiller whale Orcinus orca Jan 2013 Oorc1.1/orcOrc1 Syntenic net \nTibetan antelope Pantholops hodgsonii May 2013 PHO1.0/panHod1 Syntenic net \nCow Bos taurus Jun 2014 UMD3.1.1/bosTau8 Syntenic net \nSheep Ovis aries Aug 2012 ISGC Oarv3.1/oviAri3 Syntenic net \nDomestic goat Capra hircus May 2012 CHIR1.0/capHir1 Syntenic net \nHorse Equus caballus Sep 2007 Broad/equCab2 Syntenic net \nWhite rhinoceros Ceratotherium simum May 2012 CerSimSim1.0/cerSim1 Syntenic net \nCat Felis catus Nov 2014 ICGSC Feliscatus 8.0/felCat8 Syntenic net \nDog Canis lupus familiaris Sep 2011 Broad CanFam3.1/canFam3 Syntenic net \nFerret Mustela putorius furo Apr 2011 MusPutFur1.0/musFur1 Syntenic net \nPanda Ailuropoda melanoleuca Dec 2009 BGI-Shenzhen 1.0/ailMel1 Syntenic net \nPacific walrus Odobenus rosmarus divergens Jan 2013 Oros1.0/odoRosDiv1 Syntenic net \nWeddell seal Leptonychotes weddellii Mar 2013 LepWed1.0/lepWed1 Reciprocal best net \nBlack flying-fox Pteropus alecto Aug 2012 ASM32557v1/pteAle1 Syntenic net \nMegabat Pteropus vampyrus Jul 2008 Broad/pteVam1 Reciprocal best net \nDavid's myotis bat Myotis davidii Aug 2012 ASM32734v1/myoDav1 Syntenic net \nMicrobat Myotis lucifugus Jul 2010 Broad Institute Myoluc2.0/myoLuc2 Syntenic net \nBig brown bat Eptesicus fuscus Jul 2012 EptFus1.0/eptFus1 Syntenic net \nHedgehog Erinaceus europaeus May 2012 EriEur2.0/eriEur2 Syntenic net \nShrew Sorex araneus Aug 2008 Broad/sorAra2 Syntenic net \nStar-nosed mole Condylura cristata Mar 2012 ConCri1.0/conCri1 Syntenic net \n\n== Afrotheria subset ==\nElephant Loxodonta africana Jul 2009 Broad/loxAfr3 Syntenic net \nCape elephant shrew Elephantulus edwardii Aug 2012 EleEdw1.0/eleEdw1 Syntenic net \nManatee Trichechus manatus latirostris Oct 2011 Broad v1.0/triMan1 Syntenic net \nCape golden mole Chrysochloris asiatica Aug 2012 ChrAsi1.0/chrAsi1 Syntenic net \nTenrec Echinops telfairi Nov 2012 Broad/echTel2 Syntenic net \nAardvark Orycteropus afer afer May 2012 OryAfe1.0/oryAfe1 Syntenic net \n\n== Mammal subset ==\nArmadillo Dasypus novemcinctus Dec 2011 Baylor/dasNov3 Syntenic net \nOpossum Monodelphis domestica Oct 2006 Broad/monDom5 Net \nTasmanian devil Sarcophilus harrisii Feb 2011 WTSI Devilref v7.0/sarHar1 Net \nWallaby Macropus eugenii Sep 2009 TWGS Meug1.1/macEug2 Reciprocal best net \nPlatypus Ornithorhynchus anatinus Mar 2007 WUGSC 5.0.1/ornAna1 Reciprocal best net \n\n== Aves subset ==\nSaker falcon Falco cherrug Feb 2013 Fcherrugv1.0/falChe1 Net \nPeregrine falcon Falco peregrinus Feb 2013 Fperegrinusv1.0/falPer1 Net \nCollared flycatcher Ficedula albicollis Jun 2013 FicAlb1.5/ficAlb2 Net \nWhite-throated sparrow Zonotrichia albicollis Apr 2013 ASM38545v1/zonAlb1 Net \nMedium ground finch Geospiza fortis Apr 2012 GeoFor1.0/geoFor1 Net \nZebra finch Taeniopygia guttata Feb 2013 WashU taeGut324/taeGut2 Net \nTibetan ground jay Pseudopodoces humilis Jan 2013 PseHum1.0/pseHum1 Net \nBudgerigar Melopsittacus undulatus Sep 2011 WUSTL v6.3/melUnd1 Net \nParrot Amazona vittata Jan 2013 AV1/amaVit1 Net \nScarlet macaw Ara macao Jun 2013 SMACv1.1/araMac1 Net \nRock pigeon Columba livia Feb 2013 Cliv1.0/colLiv1 Net \nMallard duck Anas platyrhynchos Apr 2013 BGIduck1.0/anaPla1 Net \nChicken Gallus gallus Nov 2011 ICGSC Gallusgallus-4.0/galGal4 Net \nTurkey Meleagris gallopavo Dec 2009 TGC Turkey2.01/melGal1 Net \n\n== Sarcopterygii subset ==\nAmerican alligator Alligator mississippiensis Aug 2012 allMis0.2/allMis1 Net \nGreen seaturtle Chelonia mydas Mar 2013 CheMyd1.0/cheMyd1 Net \nPainted turtle Chrysemys picta bellii Mar 2014 v3.0.3/chrPic2 Net \nChinese softshell turtle Pelodiscus sinensis Oct 2011 PelSin1.0/pelSin1 Net \nSpiny softshell turtle Apalone spinifera May 2013 ASM38561v1/apaSpi1 Net \nLizard Anolis carolinensis May 2010 Broad AnoCar2.0/anoCar2 Net \nX. tropicalis Xenopus tropicalis Sep 2012 JGI 7.0/xenTro7 Net \nCoelacanth Latimeria chalumnae Aug 2011 Broad/latCha1 Net \n\n== Fish subset ==\nTetraodon Tetraodon nigroviridis Mar 2007 Genoscope 8.0/tetNig2 Net \nFugu Takifugu rubripes Oct 2011 FUGU5/fr3 Net \nYellowbelly pufferfish Takifugu flavidus May 2013 version 1 of Takifugu flavidus genome/takFla1 Net \nNile tilapia Oreochromis niloticus Jan 2011 Broad oreNil1.1/oreNil2 Net \nPrincess of Burundi Neolamprologus brichardi May 2011 NeoBri1.0/neoBri1 Net \nBurton's mouthbreeder Haplochromis burtoni Oct 2011 AstBur1.0/hapBur1 Net \nZebra mbuna Maylandia zebra Mar 2012 MetZeb1.1/mayZeb1 Net \nPundamilia nyererei Pundamilia nyererei Oct 2011 PunNye1.0/punNye1 Net \nMedaka Oryzias latipes Oct 2005 NIG/UT MEDAKA1/oryLat2 Net \nSouthern platyfish Xiphophorus maculatus Jan 2012 Xiphophorusmaculatus-4.4.2/xipMac1 Net \nStickleback Gasterosteus aculeatus Feb 2006 Broad/gasAcu1 Net \nAtlantic cod Gadus morhua May 2010 Genofisk GadMorMay2010/gadMor1 Net \nZebrafish Danio rerio Sep 2014 Zv10/danRer10 Net \nMexican tetra (cavefish) Astyanax mexicanus Apr 2013 Astyanaxmexicanus-1.0.2/astMex1 Net \nSpotted gar Lepisosteus oculatus Dec 2011 LepOcu1/lepOcu1 Net \nLamprey Petromyzon marinus Sep 2010 WUGSC 7.0/petMar2 Net \n", 'labels': {'referencegenome': 'hg38/genomes/GRCh38-hg38'}}