Resource

Id:hg38/scores/CADD_v1.6
Type:np_score
Summary: CADD score for functional prediction of a SNP. Please refer to Kircher et al. (2014) Nature Genetics 46(3):310-5 for details. The larger the score the more likely the SNP has damaging effect.
Description:

CADD GRCh38-v1.6

TODO

Please note the following copyright statement for CADD: "CADD scores (http://cadd.gs.washington.edu/) are Copyright 2013 University of Washington and Hudson-Alpha Institute for Biotechnology (all rights reserved) but are freely available for all academic, non-commercial applications. For commercial licensing information contact Jennifer McCullar (mccullaj@uw.edu).

Labels:
  • reference_genome: hg38/genomes/GRCh38-hg38

Scores

id type default annotation description histogram range
cadd_raw float

cadd_raw

CADD raw score for functional prediction of a SNP. The larger the score the more likely the SNP has damaging effect HISTOGRAM FOR cadd_raw [-19.812, 25.029]
cadd_phred float

cadd_phred

CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores. The larger the score the more likely the SNP has damaging effect. HISTOGRAM FOR cadd_phred [0.000, 99.000]

Files

Filename Size md5
genomic_resource.yaml 1.93 KB 9d9b6c2316d5595d92153748d6f66774
whole_genome_SNVs.tsv.gz 80.65 GB faaa80ef3948cf44e56a3629a90cdaaa
whole_genome_SNVs.tsv.gz.dvc 99.0 B 20780cfd6231c84d36dcb6ecdc526b42
whole_genome_SNVs.tsv.gz.sha256 91.0 B e68d5fd28400e4251e5b6f624ac7130c
whole_genome_SNVs.tsv.gz.tbi 2.63 MB 4e5aeff342ecdb498377aa186e4f8d84
whole_genome_SNVs.tsv.gz.tbi.dvc 99.0 B ca6c099b2aa7498561afc021032c049d
whole_genome_SNVs.tsv.gz.tbi.sha256 95.0 B aaf6836d60b8ead14fc0aab1bc9ba097
statistics/