Resource

Id hg38/scores/AVIcontent_copy
Type allele_score
Version 0
Summary AlphaGenome Variant Impact (AVI) scores for single-nucleotide variants
Description
Labels
  • reference_genome: hg38/genomes/ucsc-hg38

Scores (2)

ID Type Default annotation Description Histogram Range Summary
avi_raw float

avi_raw
AVI raw score
Small values desc: less damaging
Large values desc: more damaging
HISTOGRAM FOR avi_raw [-1.27, 6.08]
n
8,812,917,339
mean
0.0283
sd
0.148
avi_phred float

avi_phred
AVI phred-like score.
Small values desc: less damaging
Large values desc: more damaging
HISTOGRAM FOR avi_phred [0, 89.5]
n
8,812,917,339
mean
4.34
sd
4.34

n counts alleles; sd is the population standard deviation.

Alleles

Chromosome Alleles substitution % insertion % deletion % complex % other %
all chromosomes 8812917339 100.00% 0.00% 0.00% 0.00% 0.00%
chr1 691443036 100.00% 0.00% 0.00% 0.00% 0.00%
chr2 721644684 100.00% 0.00% 0.00% 0.00% 0.00%
chr3 594300405 100.00% 0.00% 0.00% 0.00% 0.00%
chr4 569258001 100.00% 0.00% 0.00% 0.00% 0.00%
chr5 543796134 100.00% 0.00% 0.00% 0.00% 0.00%
chr6 510235566 100.00% 0.00% 0.00% 0.00% 0.00%
chr7 476910393 100.00% 0.00% 0.00% 0.00% 0.00%
chr8 434304408 100.00% 0.00% 0.00% 0.00% 0.00%
chr9 365371650 100.00% 0.00% 0.00% 0.00% 0.00%
chr10 399788886 100.00% 0.00% 0.00% 0.00% 0.00%
chr11 403601226 100.00% 0.00% 0.00% 0.00% 0.00%
chr12 399413448 100.00% 0.00% 0.00% 0.00% 0.00%
chr13 293949375 100.00% 0.00% 0.00% 0.00% 0.00%
chr14 271704447 100.00% 0.00% 0.00% 0.00% 0.00%
chr15 253923975 100.00% 0.00% 0.00% 0.00% 0.00%
chr16 245417829 100.00% 0.00% 0.00% 0.00% 0.00%
chr17 248760612 100.00% 0.00% 0.00% 0.00% 0.00%
chr18 240268815 100.00% 0.00% 0.00% 0.00% 0.00%
chr19 175322274 100.00% 0.00% 0.00% 0.00% 0.00%
chr20 191832771 100.00% 0.00% 0.00% 0.00% 0.00%
chr21 120265857 100.00% 0.00% 0.00% 0.00% 0.00%
chr22 117479331 100.00% 0.00% 0.00% 0.00% 0.00%
chrX 464679087 100.00% 0.00% 0.00% 0.00% 0.00%
chrY 79245129 100.00% 0.00% 0.00% 0.00% 0.00%

Substitution matrix

ref → alt A C G T
A0
0.00%
867148869
9.84%
867148869
9.84%
867148869
9.84%
C599038716
6.80%
0
0.00%
599038716
6.80%
599038716
6.80%
G601512956
6.83%
601512956
6.83%
0
0.00%
601512956
6.83%
T869938572
9.87%
869938572
9.87%
869938572
9.87%
0
0.00%
ts/tv
0.50
2,937,639,113 transitions / 5,875,278,226 transversions

Indel lengths

alleles min max mean median
insertions 0
deletions 0

no insertions

no deletions

Complex alleles

no complex alleles

Files

Filename Size md5
alphagenome_variant_impact_score_snvs.tsv.gz 82.39 GB d7753d6a3aba87a0b90ecb9df3b789e3
alphagenome_variant_impact_score_snvs.tsv.gz.tbi 3.02 MB 911ee04b6e8fba1882465221b5a14f2c
genomic_resource.yaml 2.73 KB 502add89fd89c68dc185a1bb5b6194a8
statistics/