UCSCLink	collection	familyId	in affected status	personIds	location	variant	size	publicaton	genomic region	number of genes	genes
LINK	SSC	12613	affected	12613.p1	chr1:1305145-1314126	duplication	8982		coding	3	"ACAP3,INTS11,PUSL1"
LINK	AGRE	AU2725202_AU2725201	affected	AU2725301	chr1:3069177-4783791	duplication	1714615		coding	13	"AJAP1,ARHGEF16,C1orf174,CCDC27,CEP104,DFFB,LRRC47,MEGF6,PRDM16,SMIM1,TP73,TPRG1L,WRAP73"
LINK	SSC	13424	unaffected	13424.s1	chr1:3975501-3977800	deletion	2300		intergenic	0	
LINK	SSC	12852	affected	12852.p1	chr1:6647401-6650500	deletion	3100		inter-coding_intronic	1	DNAJC11
LINK	SSC	13776	affected	13776.p1	chr1:8652301-8657600	deletion	5300		coding	1	RERE
LINK	SSC	13373	unaffected	13373.s1	chr1:9992001-9994100	deletion	2100		intergenic	0	
LINK	SSC	14198	affected	14198.p1	chr1:12224601-12227300	deletion	2700		intergenic	0	
LINK	SSC	13259	affected	13259.p1	chr1:15687701-15696200	deletion	8500		inter-coding_intronic	1	PLEKHM2
LINK	SSC	14696	unaffected	14696.s1	chr1:30388501-30398807	deletion	10307		intergenic	0	
LINK	SSC	14534	affected	14534.p1	chr1:40513501-40534200	deletion	20700	Sanders 2015	coding	2	"EXO5,ZNF684"
LINK	SSC	14534	unaffected	14534.s1	chr1:40513501-40534200	deletion	20700	Sanders 2015	coding	2	"EXO5,ZNF684"
LINK	SSC	13447	unaffected	13447.s1	chr1:48141901-48243413	duplication	101513		coding	1	SLC5A9
LINK	SSC	13812	affected	13812.p1	chr1:49846201-49848300	duplication	2100		inter-coding_intronic	1	AGBL4
LINK	SSC	12021	affected	12021.p1	chr1:62652201-62703647	deletion	51447	Sanders 2015	coding	1	DOCK7
LINK	SSC	14697	affected	14697.p1	chr1:90083801-90095600	deletion	11800		intergenic	0	
LINK	SSC	13346	affected	13346.p1	chr1:93078701-105286800	deletion	5439000	Sanders 2015	coding	49	"ABCA4,ABCD3,AGL,ALG14,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,ARHGAP29,BCAR3,CCDC18,CDC14A,CNN3,COL11A1,DBT,DNTTIP2,DPH5,DPYD,DR1,EXTL2,F3,FNBP1L,FRRS1,GCLM,GPR88,LOC101928436,LRRC39,MFSD14A,MTF2,OLFM3,PALMD,PLPPR4,PLPPR5,PTBP2,RNPC3,RTCA,RWDD3,S1PR1,SASS6,SLC30A7,SLC35A3,SLC44A3,SNX7,TMED5,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1"
LINK	SSC	13649	unaffected	13649.s1	chr1:108817301-108819500	deletion	2200		inter-coding_intronic	1	AKNAD1
LINK	SSC	13346	affected	13346.p1	chr1:112016501-112981398	deletion	964898	Sanders 2015	coding	9	"CAPZA1,CTTNBP2NL,FAM19A3,MOV10,PPM1J,RHOC,SLC16A1,ST7L,WNT2B"
LINK	SSC	11989	unaffected	11989.s1	chr1:202771301-202773900	deletion	2600		coding	1	KDM5B
LINK	AGRE	AU3777202_AU3777201	affected	AU3777303	chr1:211712814-211722346	deletion	9533		intergenic	0	
LINK	SSC	13971	unaffected	13971.s1	chr1:218504701-218549300	deletion	44600		noncoding	2	"C1orf143,MIR548F3"
LINK	SSC	12010	unaffected	12010.s1	chr1:223986001-223996000	deletion	10000		noncoding	2	"GTF2IP20,LOC100287497"
LINK	AGRE	AU2997202_AU2997201	affected	AU2997301	chr1:225968501-226068899	duplication	100400		coding	2	"H3F3A,SDE2"
LINK	SSC	12161	affected	12161.p1	chr1:226785001-226793000	deletion	8000		intergenic	0	
LINK	SSC	13876	affected	13876.p1	chr1:238725802-238755482	duplication	24099		intergenic	0	
LINK	SSC	13061	affected	13061.p1	chr1:240305480-240314000	deletion	8521		inter-coding_intronic	1	FMN2
LINK	SSC	11110	affected	11110.p1	chr1:243067890-243110800	deletion	42911		noncoding	1	LINC01347
LINK	AGRE	AU1197202_AU1197201	affected	AU1197302	chr1:244569799-244572298	deletion	2500		inter-coding_intronic	1	CATSPERE
LINK	SSC	13147	affected	13147.p1	chr2:23810134-23828103	deletion	17970		coding	1	ATAD2B
LINK	SSC	14362	affected	14362.p1	chr2:27179001-27185300	deletion	6300		intergenic	0	
LINK	SSC	14008	affected	14008.p1	chr2:29052901-29060900	deletion	8000		intergenic	0	
LINK	SSC	13836	affected	13836.p1	chr2:43524901-43527700	duplication	2800		inter-coding_intronic	1	THADA
LINK	SSC	11152	affected	11152.p1	chr2:47603301-47613900	deletion	10600	Sanders 2015	intergenic	0	
LINK	SSC	13962	affected	13962.p1	chr2:50562601-51028500	deletion	465900	Sanders 2015	coding	1	NRXN1
LINK	SSC	13580	affected	13580.p1	chr2:51015001-51084500	deletion	69500	Sanders 2015	coding	1	NRXN1
LINK	SSC	13493	affected	13493.p1	chr2:52851901-53053700	duplication	201800	Sanders 2015	intergenic	0	
LINK	SSC	13629	unaffected	13629.s1	chr2:61272127-61311400	duplication	39274		coding	1	USP34
LINK	AGRE	AU3768202_AU3768201	affected	AU3768303	chr2:84642177-84645176	deletion	3000		inter-coding_intronic	1	DNAH6
LINK	SSC	11407	unaffected	11407.s1	chr2:85311701-85314200	deletion	2500		intergenic	0	
LINK	AGRE	AU1586202_AU1586201	affected	AU1586303	chr2:98330638-98333137	duplication	2500		intergenic	0	
LINK	AGRE	AU055301_AU055302	affected	AU055304	chr2:131264581-131627233	deletion	362653		coding	5	"CCDC74A,MZT2A,POTEE,RAB6D,TUBA3D"
LINK	AGRE	AU2139202_AU2139201	affected	AU2139304	chr2:137689231-137693930	deletion	4700		intergenic	0	
LINK	AGRE	AU1223202_AU1223201	affected	AU1223302	chr2:149511687-149515015	deletion	3329		intergenic	0	
LINK	AGRE	AU2793202_AU2793201	affected	AU2793301	chr2:154003588-154005587	duplication	2000		inter-coding_intronic	1	GALNT13
LINK	SSC	13016	unaffected	13016.s1	chr2:160804701-160808000	deletion	3300		intergenic	0	
LINK	SSC	13302	affected	13302.p1	chr2:169874601-169886300	deletion	11700		coding	1	UBR3
LINK	SSC	14415	affected	14415.p1	chr2:189113201-189135544	deletion	22344		inter-coding_intronic	1	COL5A2
LINK	SSC	13504	unaffected	13504.s1	chr2:208805901-208817200	deletion	11300		noncoding	1	LOC101927960
LINK	SSC	12861	unaffected	12861.s1	chr2:215277001-215283733	deletion	6733		intergenic	0	
LINK	SSC	11046	affected	11046.p1	chr3:4116701-4837700	deletion	721000	Sanders 2015	coding	3	"ITPR1,SETMAR,SUMF1"
LINK	SSC	11046	affected	11046.p1	chr3:4996799-5010099	duplication	13301		intergenic	0	
LINK	SSC	14210	affected	14210.p1	chr3:22991601-22995300	deletion	3700		intergenic	0	
LINK	SSC	11838	affected	11838.p1	chr3:27492401-27514200	deletion	21800		intergenic	0	
LINK	SSC	14662	affected	14662.p1	chr3:30796201-30800100	deletion	3900		inter-coding_intronic	1	GADL1
LINK	SSC	11696	affected	11696.p1	chr3:37236601-37409137	deletion	172537	Sanders 2015	coding	1	GOLGA4
LINK	SSC	14590	affected	14590.p1	chr3:60854801-60857200	duplication	2400		peripheral	1	FHIT
LINK	AGRE	AU2317202_AU2317201	affected	AU2317301	chr3:60960929-60991128	deletion	30200		peripheral	1	FHIT
LINK	SSC	12032	affected	12032.p1	chr3:67083420-72210353	deletion	5126934	Sanders 2015	coding	15	"ARL6IP5,EIF4E3,EOGT,FAM19A1,FAM19A4,FOXP1,FRMD4B,GPR27,LMOD3,MDFIC2,MITF,PROK2,SUCLG2,TMF1,UBA3"
LINK	SSC	13649	affected	13649.p1	chr3:68718401-68721900	duplication	3500		intergenic	0	
LINK	SSC	11479	affected	11479.p1	chr3:80527601-80555800	deletion	28200	Sanders 2015	intergenic	0	
LINK	SSC	11227	affected	11227.p1	chr3:105250701-105329648	deletion	78948	Sanders 2015	intergenic	0	
LINK	AGRE	AU0911202_AU0911201	affected	AU0911302	chr3:124759554-126072144	duplication	1312591	Leppa 2016	coding	10	"ALG1L,HEG1,ITGB5,MUC13,OSBPL11,ROPN1B,SLC12A8,SLC41A3,SNX4,ZNF148"
LINK	AGRE	AU1953202_AU1953201	affected	AU1953302	chr3:126692258-126694457	duplication	2200		intergenic	0	
LINK	SSC	13095	unaffected	13095.s1	chr3:129465801-129467800	deletion	2000		coding	1	IFT122
LINK	SSC	13348	unaffected	13348.s1	chr3:135586728-135768700	duplication	181973	Sanders 2015	intergenic	0	
LINK	SSC	11611	affected	11611.p1	chr3:140901248-140907406	deletion	6159		intergenic	0	
LINK	SSC	11450	affected	11450.p1	chr3:164452101-164471813	deletion	19713	Sanders 2015	intergenic	0	
LINK	AGRE	AU1365202_AU1365201	affected	AU1365301	chr3:186782912-186788211	deletion	5300		coding	1	EIF4A2
LINK	SSC	14595	affected	14595.p1	chr3:195986227-197654159	deletion	1667933	Sanders 2015	coding	22	"BDH1,CEP19,DLG1,FBXO45,MELTF,NCBP2,NCBP2-AS2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,UBXN7,WDR53,ZDHHC19"
LINK	SSC	11079	affected	11079.p1	chr3:195990717-197630600	deletion	1639884	Sanders 2015	coding	22	"BDH1,CEP19,DLG1,FBXO45,MELTF,NCBP2,NCBP2-AS2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,UBXN7,WDR53,ZDHHC19"
LINK	SSC	13064	affected	13064.p1	chr3:195996901-197634900	deletion	1638000	Sanders 2015	coding	22	"BDH1,CEP19,DLG1,FBXO45,MELTF,NCBP2,NCBP2-AS2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,UBXN7,WDR53,ZDHHC19"
LINK	SSC	14370	affected	14370.p1	chr4:1164464-1170615	duplication	6152		coding	1	SPON2
LINK	SSC	12399	affected	12399.p1	chr4:3436401-3443200	deletion	6800		coding	2	"HGFAC,RGS12"
LINK	SSC	14370	affected	14370.p1	chr4:7049816-7056982	duplication	7167		coding	1	TADA2B
LINK	SSC	14129	affected	14129.p1	chr4:7998801-8004100	deletion	5300		inter-coding_intronic	1	ABLIM2
LINK	SSC	13136	unaffected	13136.s1	chr4:23361536-23368416	deletion	6881		intergenic	0	
LINK	SSC	12674	affected	12674.p1	chr4:36611031-36623697	deletion	12667		noncoding	1	LINC02505
LINK	SSC	12962	unaffected	12962.s1	chr4:39589901-39603000	deletion	13100		inter-coding_intronic	1	SMIM14
LINK	SSC	12661	affected	12661.p1	chr4:40451701-40457100	deletion	5400		peripheral	1	RBM47
LINK	SSC	11546	unaffected	11546.s1	chr4:54790001-54793200	deletion	3200		intergenic	0	
LINK	SSC	14225	affected	14225.p1	chr4:65506601-65513400	deletion	6800		inter-coding_intronic	1	EPHA5
LINK	SSC	12134	unaffected	12134.s1	chr4:92123601-92127000	deletion	3400		intergenic	0	
LINK	SSC	12329	unaffected	12329.s1	chr4:92877601-92920200	deletion	42600	Sanders 2015	inter-coding_intronic	1	GRID2
LINK	SSC	13666	affected	13666.p1	chr4:93122101-93158900	deletion	36800	Sanders 2015	inter-coding_intronic	1	GRID2
LINK	SSC	11920	unaffected	11920.s1	chr4:143884601-144124900	deletion	240300	Sanders 2015	coding	3	"GYPA,GYPB,GYPE"
LINK	SSC	13088	unaffected	13088.s1	chr4:167755401-167771100	duplication	15700		intergenic	0	
LINK	AGRE	AU1782202_AU1782201	affected	AU1782301	chr4:175488950-175499049	deletion	10100		intergenic	0	
LINK	SSC	14535	unaffected	14535.s1	chr4:182708701-184116300	duplication	1407600	Sanders 2015	coding	11	"CDKN2AIP,CLDN22,CLDN24,DCTD,ENPP6,ING2,RWDD4,STOX2,TENM3,TRAPPC11,WWC2"
LINK	SSC	14477	affected	14477.p1	chr5:4933501-4946500	deletion	13000		intergenic	0	
LINK	SSC	13204	unaffected	13204.s1	chr5:11200501-11203900	deletion	3400		inter-coding_intronic	1	CTNND2
LINK	SSC	12289	affected	12289.p1	chr5:11351101-11439455	deletion	88355	Sanders 2015	coding	1	CTNND2
LINK	SSC	14661	unaffected	14661.s1	chr5:16419901-16425100	duplication	5200		noncoding	1	LINC02150
LINK	SSC	12888	unaffected	12888.s1	chr5:22287201-22551425	deletion	264225	Sanders 2015	peripheral	1	CDH12
LINK	AGRE	AU1218202_AU1218201	affected	AU1218302	chr5:31859183-31865088	deletion	5906		inter-coding_intronic	1	PDZD2
LINK	SSC	14532	affected	14532.p1	chr5:35979301-38224100	duplication	2244800	Sanders 2015	coding	12	"CPLANE1,GDNF,LMBRD2,NADK2,NIPBL,NUP155,RANBP3L,SKP2,SLC1A3,UGT3A1,UGT3A2,WDR70"
LINK	SSC	12572	unaffected	12572.s1	chr5:46340601-46363650	duplication	23050		intergenic	0	
LINK	SSC	12369	unaffected	12369.s1	chr5:62944601-62952300	deletion	7700		intergenic	0	
LINK	SSC	13737	affected	13737.p1	chr5:67758301-67762000	deletion	3700		intergenic	0	
LINK	SSC	12575	unaffected	12575.s1	chr5:72334394-72356874	deletion	22481		coding	1	PTCD2
LINK	SSC	13230	affected	13230.p1	chr5:76307201-76309400	deletion	2200		inter-coding_intronic	1	SV2C
LINK	SSC	11027	affected	11027.p1	chr5:76722601-76726000	deletion	3400		inter-coding_intronic	1	F2R
LINK	SSC	12552	affected	12552.p1	chr5:82805501-82809500	deletion	4000		intergenic	0	
LINK	SSC	11642	affected	11642.p1	chr5:86381447-86395303	deletion	13857	Sanders 2015	intergenic	0	
LINK	SSC	14151	affected	14151.p1	chr5:97011101-97016200	deletion	5100		coding	1	LNPEP
LINK	AGRE	AU3199202_AU3199201	affected	AU3199301	chr5:112510204-112531303	deletion	21100		intergenic	0	
LINK	AGRE	AU1757202_AU1757201	affected	AU1757302	chr5:119059006-119115805	deletion	56800		coding	1	DMXL1
LINK	SSC	12373	unaffected	12373.s1	chr5:120588071-120672600	deletion	84530	Sanders 2015	peripheral	1	PRR16
LINK	AGRE	AU3143202_AU3143201	affected	AU3143304	chr5:134600911-134728410	deletion	127500		coding	2	"SAR1B,SEC24A"
LINK	SSC	14478	affected	14478.p1	chr5:138101001-138808800	duplication	707800	Sanders 2015	coding	13	"BRD8,CDC23,CDC25C,CTNNA1,EGR1,ETF1,FAM53C,GFRA3,HSPA9,KDM3B,KIF20A,NME5,REEP2"
LINK	SSC	13773	unaffected	13773.s1	chr5:149654201-149656800	deletion	2600		intergenic	0	
LINK	SSC	13307	unaffected	13307.s1	chr5:178602222-178612400	duplication	10179		coding	1	CLK4
LINK	SSC	14016	unaffected	14016.s1	chr6:1744903-2450672	duplication	697200	Sanders 2015	coding	1	GMDS
LINK	SSC	13210	affected	13210.p1	chr6:34607301-34800800	duplication	193500		coding	3	"C6orf106,SNRPC,UHRF1BP1"
LINK	AGRE	AU3646202_AU3646201	affected	AU3646302	chr6:35915827-35974019	deletion	43289		coding	2	"SLC26A8,SRPK1"
LINK	AGRE	AU3646202_AU3646201	affected	AU3646301	chr6:35916353-35973530	deletion	42274		coding	2	"SLC26A8,SRPK1"
LINK	SSC	14514	affected	14514.p1	chr6:67114901-67122500	deletion	7600		intergenic	0	
LINK	SSC	13753	affected	13753.p1	chr6:67141701-67147600	deletion	5900		intergenic	0	
LINK	SSC	14404	affected	14404.p1	chr6:73390797-73398500	deletion	7704		coding	1	DDX43
LINK	AGRE	AU1988202_AU1988201	affected	AU1988302	chr6:73688578-73696777	deletion	8200		coding	1	CD109
LINK	SSC	12775	affected	12775.p1	chr6:76977858-76986825	deletion	8968		intergenic	0	
LINK	SSC	14127	affected	14127.p1	chr6:83647501-83650700	duplication	3200		inter-coding_intronic	1	SNAP91
LINK	AGRE	AU1756202_AU1756201	affected	AU1756303	chr6:110666098-110668997	deletion	2900		coding	1	CDK19
LINK	SSC	14467	unaffected	14467.s1	chr6:110879219-111020192	duplication	140974		coding	3	"AMD1,GTF3C6,RPF2"
LINK	AGRE	AU1756202_AU1756201	affected	AU1756302	chr6:118380438-118386037	deletion	5600		intergenic	0	
LINK	SSC	12610	affected	12610.p1	chr6:137801001-137803000	deletion	2000		intergenic	0	
LINK	SSC	13478	affected	13478.p1	chr6:140863801-140980500	duplication	116700	Sanders 2015	intergenic	0	
LINK	SSC	14533	unaffected	14533.s1	chr6:155146501-155157200	deletion	10700		coding	1	TIAM2
LINK	SSC	14609	affected	14609.p1	chr6:156330186-157547584	deletion	1217399	Sanders 2015	coding	3	"ARID1B,TMEM242,ZDHHC14"
LINK	SSC	13928	affected	13928.p1	chr6:157178001-157192200	deletion	14200		coding	1	ARID1B
LINK	SSC	13886	unaffected	13886.s1	chr7:1055901-1062000	deletion	6100		coding	1	GPR146
LINK	SSC	14189	affected	14189.p1	chr7:1196801-1300477	duplication	103677		coding	1	UNCX
LINK	SSC	11031	unaffected	11031.s1	chr7:6898224-6950135	deletion	51912		intergenic	0	
LINK	SSC	14240	affected	14240.p1	chr7:8738001-8796830	deletion	58830	Sanders 2015	coding	1	NXPH1
LINK	SSC	13875	unaffected	13875.s1	chr7:11722601-11885600	deletion	163000	Sanders 2015	coding	1	THSD7A
LINK	AGRE	AU1542202_AU1542201	affected	AU1542304	chr7:38340300-38343699	deletion	3400		noncoding	1	TRG-AS1
LINK	SSC	12394	affected	12394.p1	chr7:39058001-39061000	deletion	3000		inter-coding_intronic	1	POU6F2
LINK	SSC	11868	affected	11868.p1	chr7:67457001-67618800	duplication	161800		intergenic	0	
LINK	SSC	12313	unaffected	12313.s1	chr7:68825901-68829400	deletion	3500		intergenic	0	
LINK	SSC	12821	affected	12821.p1	chr7:70070701-70143300	deletion	72600		coding	1	AUTS2
LINK	SSC	12955	affected	12955.p1	chr7:73240499-74739238	duplication	1489525	Sanders 2015	coding	25	"ABHD11,BAZ1B,BCL7B,BUD23,CLDN3,CLDN4,CLIP2,DNAJC30,EIF4H,ELN,FKBP6,FZD9,GTF2I,GTF2IRD1,LAT2,LIMK1,METTL27,MLXIPL,NSUN5,RFC2,STX1A,TBL2,TMEM270,TRIM50,VPS37D"
LINK	SSC	11154	affected	11154.p1	chr7:73240499-74746293	duplication	1505795	Sanders 2015	coding	25	"ABHD11,BAZ1B,BCL7B,BUD23,CLDN3,CLDN4,CLIP2,DNAJC30,EIF4H,ELN,FKBP6,FZD9,GTF2I,GTF2IRD1,LAT2,LIMK1,METTL27,MLXIPL,NSUN5,RFC2,STX1A,TBL2,TMEM270,TRIM50,VPS37D"
LINK	SSC	12134	affected	12134.p1	chr7:74531101-75149500	duplication	358124	Sanders 2015	coding	7	"CASTOR2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,NCF1,RCC1L"
LINK	SSC	11676	affected	11676.p1	chr7:75427201-75430900	deletion	3700		inter-coding_intronic	1	POM121C
LINK	SSC	14604	affected	14604.p1	chr7:90362501-90367400	deletion	4900		inter-coding_intronic	1	GTPBP10
LINK	AGRE	AU1802202_AU1802201	affected	AU1802302	chr7:94956789-94960688	deletion	3900		inter-coding_intronic	1	PPP1R9A
LINK	SSC	13034	affected	13034.p1	chr7:95155101-95161000	deletion	5900		inter-coding_intronic	1	PPP1R9A
LINK	SSC	14224	unaffected	14224.s1	chr7:119798901-119832100	deletion	33200	Sanders 2015	noncoding	1	LINC02476
LINK	AGRE	AU3779202_AU3779201	affected	AU3779304	chr7:142631185-142633884	deletion	2700		intergenic	0	
LINK	SSC	14478	unaffected	14478.s1	chr7:142686101-142690200	deletion	4100		intergenic	0	
LINK	SSC	12152	unaffected	12152.s1	chr7:143928301-143931900	deletion	3600		intergenic	0	
LINK	AGRE	AU1033202_AU1033201	affected	AU1033301	chr7:146417009-146419608	duplication	2600		inter-coding_intronic	1	CNTNAP2
LINK	AGRE	AU1891202_AU1891201	affected	AU1891301	chr7:152065116-152348142	duplication	283027		coding	2	"GALNT11,KMT2C"
LINK	SSC	11225	affected	11225.p1	chr8:4121001-4505800	deletion	384800	Sanders 2015	coding	1	CSMD1
LINK	SSC	13263	unaffected	13263.s1	chr8:5623601-5948464	deletion	324864	Sanders 2015	intergenic	0	
LINK	AGRE	AU3127202_AU3127201	affected	AU3127302	chr8:10523091-10669211	deletion	146121		coding	2	"PRSS55,RP1L1"
LINK	SSC	13812	unaffected	13812.s1	chr8:11895501-11899300	deletion	3800		intergenic	0	
LINK	SSC	14694	unaffected	14694.s1	chr8:16193454-16218525	deletion	25072	Sanders 2015	intergenic	0	
LINK	SSC	13484	unaffected	13484.s1	chr8:28412497-28422399	deletion	9903		intergenic	0	
LINK	SSC	12972	affected	12972.p1	chr8:30672701-30676700	deletion	4000		intergenic	0	
LINK	SSC	11304	affected	11304.p1	chr8:34339901-34345300	deletion	5400		intergenic	0	
LINK	AGRE	AU035001_AU035002	affected	AU035004	chr8:46772558-47729530	duplication	809073		coding	1	SPIDR
LINK	SSC	11445	affected	11445.p1	chr8:83793001-83802400	deletion	9400		intergenic	0	
LINK	SSC	12680	affected	12680.p1	chr8:88538627-88569152	duplication	14328		intergenic	0	
LINK	AGRE	AU2777202_AU2777201	affected	AU2777302	chr8:89339372-89371471	duplication	32100		intergenic	0	
LINK	SSC	14465	unaffected	14465.s1	chr8:113259301-113262900	duplication	3600		inter-coding_intronic	1	CSMD3
LINK	SSC	13215	unaffected	13215.s1	chr8:117248501-117250600	deletion	2100		intergenic	0	
LINK	AGRE	AU2885202_AU2885201	affected	AU2885301	chr8:119831761-119835060	deletion	3300		coding	2	"DSCC1,TAF2"
LINK	SSC	14661	affected	14661.p1	chr8:121430001-121439399	deletion	9399		intergenic	0	
LINK	AGRE	AU2063202_AU2063201	affected	AU2063307	chr8:122367662-122396983	deletion	29322		intergenic	0	
LINK	SSC	14558	affected	14558.p1	chr8:129992401-129996300	deletion	3900		peripheral	1	FAM49B
LINK	SSC	12871	unaffected	12871.s1	chr8:135669041-135912099	duplication	243059	Sanders 2015	intergenic	0	
LINK	SSC	14185	unaffected	14185.s1	chr8:142739201-142943411	duplication	204211	Sanders 2015	coding	9	"CYP11B1,CYP11B2,GML,LY6D,LYNX1,LYNX1-SLURP2,LYPD2,SLURP1,SLURP2"
LINK	SSC	11258	affected	11258.p1	chr8:144403601-144417100	duplication	13500		coding	2	"CPSF1,SLC39A4"
LINK	SSC	14505	unaffected	14505.s1	chr9:727020-1345486	duplication	618467	Sanders 2015	coding	4	"DMRT1,DMRT2,DMRT3,KANK1"
LINK	SSC	11922	affected	11922.p1	chr9:3208401-3212100	deletion	3700		intergenic	0	
LINK	SSC	11348	affected	11348.p1	chr9:13306701-13316760	deletion	10060	Sanders 2015	intergenic	0	
LINK	SSC	14606	unaffected	14606.s1	chr9:19116201-19152500	duplication	36300		coding	1	PLIN2
LINK	AGRE	AU1842202_AU1842201	affected	AU1842303	chr9:26421748-26427802	deletion	6055		intergenic	0	
LINK	SSC	14254	affected	14254.p1	chr9:69237901-74105500	deletion	4867600	Sanders 2015	coding	18	"ABHD17B,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf57,C9orf85,CEMIP2,FAM189A2,GDA,KLF9,MAMDC2,PTAR1,SMC5,TJP2,TMC1,TRPM3,ZFAND5"
LINK	SSC	13601	unaffected	13601.s1	chr9:95973300-96002719	deletion	29420		coding	1	ERCC6L2
LINK	SSC	12420	unaffected	12420.s1	chr9:98623901-98626300	deletion	2400		inter-coding_intronic	1	GABBR2
LINK	SSC	11262	affected	11262.p1	chr9:106931801-106937768	deletion	5968		coding	1	ZNF462
LINK	SSC	13632	affected	13632.p1	chr9:122883901-122894151	deletion	10251		coding	1	RC3H2
LINK	SSC	12235	affected	12235.p1	chr9:128105349-128709200	duplication	603852	Sanders 2015	coding	19	"C9orf16,CERCAM,CIZ1,COQ4,DNM1,GLE1,GOLGA2,LCN2,ODF2,PKN3,PTGES2,SET,SLC25A25,SLC27A4,SPTAN1,SWI5,TRUB2,URM1,WDR34"
LINK	SSC	12100	unaffected	12100.s1	chr9:130650001-130655300	duplication	5300		intergenic	0	
LINK	SSC	12370	affected	12370.p1	chr9:131903401-132064700	duplication	161300	Sanders 2015	coding	1	MED27
LINK	SSC	12153	unaffected	12153.s1	chr9:136957901-136961400	deletion	3500		intergenic	0	
LINK	SSC	12581	affected	12581.p1	chr9:137440201-137448697	duplication	8497		peripheral	2	"ENTPD8,NSMF"
LINK	SSC	12581	affected	12581.p1	chr9:137785801-138185500	deletion	399700	Sanders 2015	coding	2	"CACNA1B,EHMT1"
LINK	SSC	13070	affected	13070.p1	chr10:485401-686700	duplication	201300		coding	2	"DIP2C,PRR26"
LINK	SSC	14572	unaffected	14572.s1	chr10:786601-1340200	duplication	553600	Sanders 2015	coding	6	"ADARB2,GTPBP4,IDI1,IDI2,LARP4B,WDR37"
LINK	SSC	14046	unaffected	14046.s1	chr10:13096001-13119300	deletion	23300	Sanders 2015	coding	1	OPTN
LINK	SSC	13862	affected	13862.p1	chr10:13913228-13941722	deletion	28495	Sanders 2015	inter-coding_intronic	1	FRMD4A
LINK	SSC	14211	unaffected	14211.s1	chr10:15248101-20441864	deletion	5193764	Sanders 2015	coding	20	"ARL5B,C1QL3,CACNB2,CUBN,FAM171A1,HACD1,ITGA8,MALRD1,MINDY3,MRC1,NSUN6,PLXDC2,PTER,RSU1,SLC39A12,ST8SIA6,STAM,TMEM236,TRDMT1,VIM"
LINK	AGRE	AU1664202_AU1664201	affected	AU1664302	chr10:21789772-21819227	duplication	29456		coding	1	DNAJC1
LINK	SSC	14610	affected	14610.p1	chr10:21883601-21930534	duplication	46934		coding	1	DNAJC1
LINK	SSC	14179	unaffected	14179.s1	chr10:34540280-34605941	duplication	65662		inter-coding_intronic	1	PARD3
LINK	SSC	12481	unaffected	12481.s1	chr10:38792201-38802000	deletion	9800		intergenic	0	
LINK	SSC	13842	affected	13842.p1	chr10:45305001-45308900	deletion	3900		peripheral	1	OR13A1
LINK	SSC	12523	unaffected	12523.s1	chr10:45345501-45674700	duplication	329200		coding	3	"ALOX5,MARCH8,ZFAND4"
LINK	AGRE	AU032901_AU032902	affected	AU032903	chr10:49643277-60065041	duplication	10197235	Leppa 2016	coding	29	"A1CF,AGAP6,ANK3,ASAH2,ASAH2B,BICC1,C10orf53,CCDC6,CHAT,CISD1,CSTF2T,DKK1,FAM13C,IPMK,MBL2,MRLN,MTRNR2L5,OGDHL,PARG,PCDH15,PHYHIPL,PRKG1,SGMS1,SLC16A9,TFAM,TIMM23B,UBE2D1,WASHC2A,ZWINT"
LINK	SSC	12631	unaffected	12631.s1	chr10:66315101-66518394	deletion	203294	Sanders 2015	coding	1	CTNNA3
LINK	SSC	13505	affected	13505.p1	chr10:75436201-75438200	deletion	2000		inter-coding_intronic	1	LRMDA
LINK	SSC	12735	affected	12735.p1	chr10:76525601-76529600	deletion	4000		inter-coding_intronic	1	LRMDA
LINK	SSC	13812	unaffected	13812.s1	chr10:80974542-81010579	deletion	33768	Sanders 2015	intergenic	0	
LINK	AGRE	AU1296202_AU1296201	affected	AU1296302	chr10:84525645-84531044	deletion	5400		intergenic	0	
LINK	AGRE	AU1196202_AU1196201	affected	AU1196302	chr10:98639644-99173088	duplication	533445	Leppa 2016	coding	1	HPSE2
LINK	AGRE	AU2007202_AU2007201	affected	AU2007302	chr10:105026543-105029442	deletion	2900		inter-coding_intronic	1	SORCS3
LINK	SSC	13903	unaffected	13903.s1	chr10:105690501-105693000	deletion	2500		noncoding	1	LOC101927549
LINK	SSC	14616	affected	14616.p1	chr10:112613901-113475629	deletion	861729	Sanders 2015	coding	2	"TCF7L2,VTI1A"
LINK	SSC	11718	affected	11718.p1	chr10:118991427-119221337	duplication	229911	Sanders 2015	coding	6	"EIF3A,FAM45A,GRK5,NANOS1,PRDX3,SFXN4"
LINK	SSC	14590	unaffected	14590.s1	chr10:125085401-125087700	deletion	2300		peripheral	1	CTBP2
LINK	SSC	14247	unaffected	14247.s1	chr11:191279-283451	duplication	92173	Sanders 2015	coding	7	"BET1L,NLRP6,ODF3,PSMD13,RIC8A,SCGB1C1,SIRT3"
LINK	SSC	14467	affected	14467.p1	chr11:18358967-18365366	deletion	6400	Sanders 2015	coding	1	GTF2H1
LINK	SSC	14695	unaffected	14695.s1	chr11:34118419-34138507	deletion	20089		coding	1	NAT10
LINK	SSC	13148	affected	13148.p1	chr11:38992901-39004900	duplication	12000		intergenic	0	
LINK	SSC	14270	affected	14270.p1	chr11:45926701-47081700	deletion	1155000	Sanders 2015	coding	15	"AMBRA1,ARHGAP1,ATG13,C11orf49,CHRM4,CKAP5,CREB3L1,DGKZ,F2,HARBI1,LARGE2,LRP4,MDK,PHF21A,ZNF408"
LINK	AGRE	AU2004202_AU2004203	affected	AU2004303	chr11:46609851-46615250	deletion	5400		inter-coding_intronic	1	HARBI1
LINK	AGRE	AU0412202_AU0412201	affected	AU0412303	chr11:50405430-50448680	duplication	43251		noncoding	1	LOC646813
LINK	SSC	11685	unaffected	11685.s1	chr11:69286301-69344800	deletion	58500		coding	1	MYEOV
LINK	SSC	12100	affected	12100.p1	chr11:72324501-72334700	deletion	10200		coding	1	CLPB
LINK	SSC	13611	unaffected	13611.s1	chr11:99527001-99643400	deletion	116400	Sanders 2015	coding	1	CNTN5
LINK	AGRE	AU1098202_AU1098201	affected	AU1098303	chr11:102002649-102007469	deletion	4821		intergenic	0	
LINK	SSC	12975	affected	12975.p1	chr11:121392801-123018200	deletion	1625400	Sanders 2015	coding	6	"BLID,BSX,CRTAM,JHY,SORL1,UBASH3B"
LINK	SSC	14681	unaffected	14681.s1	chr11:122438501-122516951	duplication	78451	Sanders 2015	intergenic	0	
LINK	SSC	14508	unaffected	14508.s1	chr11:132724001-132728400	deletion	4400		inter-coding_intronic	1	OPCML
LINK	AGRE	AU4056202_AU4056201	affected	AU4056301	chr12:81935-146234	deletion	64300		coding	1	IQSEC3
LINK	SSC	11714	affected	11714.p1	chr12:3548101-3556237	deletion	8137	Sanders 2015	coding	1	PRMT8
LINK	SSC	14473	unaffected	14473.s1	chr12:5962701-5988945	duplication	26245	Sanders 2015	coding	1	VWF
LINK	SSC	14473	unaffected	14473.s1	chr12:6021101-6113300	deletion	92200	Sanders 2015	coding	1	VWF
LINK	SSC	13608	affected	13608.p1	chr12:7822601-7839300	duplication	16700		coding	1	SLC2A14
LINK	SSC	13694	affected	13694.p1	chr12:25274272-25289145	deletion	14874	Sanders 2015	intergenic	0	
LINK	SSC	14552	affected	14552.p1	chr12:42099401-42580400	duplication	481000	Sanders 2015	coding	5	"GXYLT1,PPHLN1,PRICKLE1,YAF2,ZCRB1"
LINK	SSC	13146	affected	13146.p1	chr12:76950001-76953500	deletion	3500		intergenic	0	
LINK	SSC	14030	unaffected	14030.s1	chr12:85342101-85344400	duplication	2300		intergenic	0	
LINK	SSC	11963	affected	11963.p1	chr12:96828040-96841343	duplication	13304		coding	1	CFAP54
LINK	SSC	14560	unaffected	14560.s1	chr12:99719201-99750000	deletion	30800		inter-coding_intronic	1	ANKS1B
LINK	SSC	11775	affected	11775.p1	chr12:104070701-104073000	duplication	2300		inter-coding_intronic	1	HCFC2
LINK	SSC	11004	affected	11004.p1	chr12:122132001-122161200	deletion	29200	Sanders 2015	coding	1	MLXIP
LINK	AGRE	AU2337202_AU2337201	affected	AU2337303	chr12:130581256-131208555	duplication	627300	Leppa 2016	coding	3	"ADGRD1,RAN,STX2"
LINK	SSC	14181	unaffected	14181.s1	chr13:19905301-19981900	duplication	76600		coding	1	ZMYM2
LINK	SSC	12821	unaffected	12821.s1	chr13:31548001-31555600	deletion	7600		intergenic	0	
LINK	SSC	11038	affected	11038.p1	chr13:31779601-31787600	deletion	8000		coding	1	RXFP2
LINK	SSC	12343	affected	12343.p1	chr13:40523601-41343725	duplication	820125	Sanders 2015	coding	9	"ELF1,FOXO1,KBTBD6,KBTBD7,MRPS31,MTRF1,NAA16,SLC25A15,WBP4"
LINK	AGRE	AU1894203_AU1894201	affected	AU1894303	chr13:49602565-49606164	deletion	3600		intergenic	0	
LINK	SSC	11537	unaffected	11537.s1	chr13:60802801-60807900	deletion	5100		intergenic	0	
LINK	SSC	12550	unaffected	12550.s1	chr13:78154001-78158600	duplication	4600		noncoding	1	RNF219-AS1
LINK	AGRE	AU4089202_AU4089201	affected	AU4089301	chr13:81527166-81558965	deletion	31800		intergenic	0	
LINK	AGRE	AU2617202_AU2617201	affected	AU2617302	chr13:87681446-87712166	deletion	30721		intergenic	0	
LINK	SSC	11472	unaffected	11472.s1	chr13:101584701-101627100	deletion	42400	Sanders 2015	coding	1	ITGBL1
LINK	SSC	11380	affected	11380.p1	chr13:105111901-105162854	duplication	50954	Sanders 2015	intergenic	0	
LINK	SSC	13332	affected	13332.p1	chr13:107708201-107733800	deletion	25600		inter-coding_intronic	1	FAM155A
LINK	SSC	14432	unaffected	14432.s1	chr13:108869901-108872100	deletion	2200		inter-coding_intronic	1	MYO16
LINK	SSC	12426	unaffected	12426.s1	chr14:39510801-39751400	deletion	240600	Sanders 2015	intergenic	0	
LINK	AGRE	AU4235202_AU4235201	affected	AU4235301	chr14:41119196-41123467	deletion	4272		noncoding	1	LINC02315
LINK	SSC	14204	unaffected	14204.s1	chr14:41391101-41396900	deletion	5800		intergenic	0	
LINK	SSC	11788	unaffected	11788.s1	chr14:44605601-44619000	deletion	13400		intergenic	0	
LINK	AGRE	AU1756202_AU1756201	affected	AU1756301	chr14:54229883-54239504	deletion	9622		intergenic	0	
LINK	AGRE	AU3369202_AU3369201	affected	AU3369302	chr14:58204069-58210435	duplication	6367		coding	1	ACTR10
LINK	SSC	14114	affected	14114.p1	chr14:65690063-65705900	deletion	15838		inter-coding_intronic	1	FUT8
LINK	AGRE	AU002801_AU002802	affected	AU002804	chr14:70326984-70771483	duplication	444500		coding	8	"ADAM20,ADAM21,COX16,MAP3K9,MED6,SYNJ2BP,SYNJ2BP-COX16,TTC9"
LINK	AGRE	AU1510202_AU1510201	affected	AU1510303	chr14:96492355-96496263	deletion	3909		intergenic	0	
LINK	SSC	13907	affected	13907.p1	chr14:102595201-102599400	deletion	4200		inter-coding_intronic	1	RCOR1
LINK	SSC	13589	affected	13589.p1	chr14:104392935-104505700	duplication	112766	Sanders 2015	intergenic	0	
LINK	SSC	14159	affected	14159.p1	chr15:23364101-28345675	duplication	4930794	Sanders 2015	coding	15	"ATP10A,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA8S,HERC2,MAGEL2,MKRN3,NDN,NPAP1,OCA2,SNRPN,SNURF,UBE3A"
LINK	AGRE	AU1042202_AU1042201	affected	AU1042303	chr15:23430715-28343827	duplication	4515445	Leppa 2016	coding	14	"ATP10A,GABRA5,GABRB3,GABRG3,GOLGA6L2,HERC2,MAGEL2,MKRN3,NDN,NPAP1,OCA2,SNRPN,SNURF,UBE3A"
LINK	AGRE	AU4007202_AU4007201	affected	AU4007301	chr15:23432884-28302029	duplication	4087383	Leppa 2016	coding	14	"ATP10A,GABRA5,GABRB3,GABRG3,GOLGA6L2,HERC2,MAGEL2,MKRN3,NDN,NPAP1,OCA2,SNRPN,SNURF,UBE3A"
LINK	AGRE	AU013201_AU013202	affected	AU013203	chr15:23565987-23719653	duplication	153667		coding	3	"MAGEL2,MKRN3,NDN"
LINK	AGRE	AU013201_AU013202	affected	AU013204	chr15:23566153-23719453	duplication	153301		coding	3	"MAGEL2,MKRN3,NDN"
LINK	SSC	13355	affected	13355.p1	chr15:26722901-27307300	duplication	584400	Sanders 2015	coding	3	"GABRA5,GABRB3,GABRG3"
LINK	SSC	14531	affected	14531.p1	chr15:28746501-30955500	duplication	520315	Sanders 2015	coding	16	"APBA2,ARHGAP11B,CHRFAM7A,FAM189A1,FAN1,GOLGA6L7,GOLGA8H,GOLGA8J,GOLGA8N,GOLGA8Q,GOLGA8R,GOLGA8T,LOC100996413,MTMR10,NSMCE3,TJP1"
LINK	SSC	11928	affected	11928.p1	chr15:30613901-32154735	duplication	1540835	Sanders 2015	coding	10	"ARHGAP11B,CHRNA7,FAN1,GOLGA8H,GOLGA8N,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
LINK	AGRE	AU2792202_AU2792201	affected	AU2792302	chr15:33829939-33854024	deletion	24086		coding	1	RYR3
LINK	SSC	14308	affected	14308.p1	chr15:53604701-53612476	deletion	7776		coding	1	WDR72
LINK	SSC	13604	affected	13604.p1	chr15:53689101-53691900	deletion	2800		inter-coding_intronic	1	WDR72
LINK	SSC	11233	affected	11233.p1	chr15:68807301-73859200	deletion	5051900	Sanders 2015	coding	34	"ADPGK,ANP32A,ARIH1,BBS4,CD276,CELF6,CT62,GLCE,GOLGA6B,GRAMD2A,HCN4,HEXA,HIGD2B,INSYN1,KIF23,LARP6,LRRC49,MYO9A,NEO1,NOX5,NPTN,NR2E3,PAQR5,PARP6,PKM,REC114,RPLP1,SENP8,SPESP1,THAP10,THSD4,TLE3,TMEM202,UACA"
LINK	AGRE	AU1652202_AU1652201	affected	AU1652301	chr15:74881560-74909392	duplication	27833		coding	2	"FAM219B,MPI"
LINK	SSC	13314	affected	13314.p1	chr15:92940901-92945600	deletion	4700		coding	1	CHD2
LINK	AGRE	AU1772202_AU1772201	affected	AU1772301	chr15:93345472-93448771	deletion	103300		intergenic	0	
LINK	SSC	11042	unaffected	11042.s1	chr15:93755201-93797400	deletion	42200	Sanders 2015	intergenic	0	
LINK	AGRE	AU1305202_AU1305201	affected	AU1305303	chr15:94193172-94206260	deletion	13089		intergenic	0	
LINK	SSC	13465	affected	13465.p1	chr15:95927401-96080335	duplication	152935	Sanders 2015	intergenic	0	
LINK	SSC	14443	affected	14443.p1	chr15:98936210-99462439	duplication	526230	Sanders 2015	coding	5	"IGF1R,LRRC28,PGPEP1L,SYNM,TTC23"
LINK	SSC	11435	affected	11435.p1	chr16:32304-1264400	deletion	1232097	Sanders 2015	coding	55	"ARHGDIG,AXIN1,C1QTNF8,CACNA1H,CAPN15,CCDC78,CHTF18,CIAO3,DECR2,FAM173A,FAM234A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,JMJD8,LMF1,LUC7L,MCRIP2,METRN,METTL26,MPG,MRPL28,MSLN,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SSTR5,STUB1,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,WDR24,WDR90,WFIKKN1"
LINK	AGRE	AU010901_AU010902	affected	AU010904	chr16:628401-654300	deletion	25900		coding	4	"MCRIP2,METTL26,WDR90,WFIKKN1"
LINK	SSC	14134	affected	14134.p1	chr16:2292001-2295900	deletion	3900		coding	1	ABCA3
LINK	SSC	12984	affected	12984.p1	chr16:3424701-3455500	deletion	30800	Sanders 2015	coding	2	"NAA60,ZNF597"
LINK	SSC	11551	affected	11551.p1	chr16:8715232-9208187	duplication	492956	Sanders 2015	coding	6	"ABAT,C16orf72,CARHSP1,PMM2,TMEM186,USP7"
LINK	SSC	11168	affected	11168.p1	chr16:8806101-9152412	duplication	346312	Sanders 2015	coding	4	"C16orf72,CARHSP1,PMM2,USP7"
LINK	SSC	14638	affected	14638.p1	chr16:24714401-27418700	duplication	1168104	Sanders 2015	coding	12	"AQP8,ARHGAP17,C16orf82,HS3ST4,IL21R,IL4R,KDM8,LCMT1,NSMCE1,SLC5A11,TNRC6A,ZKSCAN2"
LINK	SSC	13416	affected	13416.p1	chr16:28743701-29052769	deletion	309069	Sanders 2015	coding	10	"ATP2A1,ATXN2L,CD19,LAT,NFATC2IP,NPIPB9,RABEP2,SH2B1,SPNS1,TUFM"
LINK	SSC	12435	affected	12435.p1	chr16:29523777-30189981	duplication	666205	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	12100	affected	12100.p1	chr16:29532431-30188900	deletion	656470	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	13335	affected	13335.p1	chr16:29536287-30189981	duplication	653695	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	14023	affected	14023.p1	chr16:29536287-30190504	duplication	654218	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	12451	affected	12451.p1	chr16:29545142-30188900	deletion	643759	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	11433	affected	11433.p1	chr16:29545142-30189981	deletion	644840	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	12308	affected	12308.p1	chr16:29545142-30189981	deletion	644840	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	11090	affected	11090.p1	chr16:29545142-30190504	deletion	645363	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	12647	affected	12647.p1	chr16:29545142-30191700	duplication	646559	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	11540	affected	11540.p1	chr16:29547579-30188800	deletion	641222	Sanders 2015	coding	28	"ALDOA,ASPHD1,C16orf54,C16orf92,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LOC112694756,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SPN,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
LINK	SSC	12643	unaffected	12643.s1	chr16:51934201-51943700	deletion	9500		intergenic	0	
LINK	SSC	11809	unaffected	11809.s1	chr16:61786101-61802698	duplication	16598		coding	1	CDH8
LINK	SSC	13815	affected	13815.p1	chr16:76212301-76482200	deletion	269900	Sanders 2015	coding	1	CNTNAP4
LINK	SSC	12383	affected	12383.p1	chr16:77909701-77998815	deletion	89115	Sanders 2015	coding	1	VAT1L
LINK	SSC	13993	affected	13993.p1	chr16:81031601-81210700	deletion	179100	Sanders 2015	coding	5	"ATMIN,C16orf46,CENPN,GCSH,PKD1L2"
LINK	SSC	11327	affected	11327.p1	chr16:81144501-86159600	deletion	5015100	Sanders 2015	coding	36	"ADAD2,ATP2C2,BCO1,C16orf74,CDH13,CMIP,COTL1,COX4I1,CRISPLD2,DNAAF1,EMC8,FAM92B,GAN,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IRF8,KCNG4,KIAA0513,KLHL36,MBTPS1,MEAK7,MLYCD,MPHOSPH6,NECAB2,OSGIN1,PKD1L2,PLCG2,SDR42E1,SLC38A8,TAF1C,USP10,WFDC1,ZDHHC7"
LINK	SSC	14475	affected	14475.p1	chr16:83127201-83203200	deletion	76000	Sanders 2015	coding	1	CDH13
LINK	AGRE	AU1072202_AU1072201	affected	AU1072303	chr16:83921996-84092002	deletion	170007		coding	4	"MBTPS1,NECAB2,OSGIN1,SLC38A8"
LINK	SSC	12613	unaffected	12613.s1	chr16:84203001-84205400	deletion	2400		intergenic	0	
LINK	SSC	13874	unaffected	13874.s1	chr16:84413362-84495119	deletion	81758	Sanders 2015	coding	2	"ATP2C2,MEAK7"
LINK	SSC	14412	unaffected	14412.s1	chr16:89740401-89753952	duplication	13552	Sanders 2015	coding	1	FANCA
LINK	SSC	14226	affected	14226.p1	chr17:1064004-1709900	duplication	645897	Sanders 2015	coding	13	"ABR,BHLHA9,CRK,INPP5K,MYO1C,PITPNA,PRPF8,RILP,SCARF1,SLC43A2,TLCD2,TRARG1,YWHAE"
LINK	SSC	12243	affected	12243.p1	chr17:1612601-1620251	deletion	7651		coding	1	SLC43A2
LINK	SSC	13555	affected	13555.p1	chr17:14185901-15582900	deletion	1397000	Sanders 2015	coding	9	"CDRT1,CDRT15,CDRT4,COX10,HS3ST3B1,PMP22,TEKT3,TVP23C,TVP23C-CDRT4"
LINK	SSC	13561	affected	13561.p1	chr17:15964201-18070300	duplication	2106100	Sanders 2015	coding	28	"ADORA2B,ATPAF2,CCDC144A,CENPV,COPS3,DRC3,FAM106CP,FLCN,GID4,LRRC75A,MED9,MPRIP,NCOR1,NT5M,PEMT,PIGL,PLD6,RAI1,RASD1,SREBF1,TNFRSF13B,TOM1L2,TRPV2,TTC19,UBB,ZNF287,ZNF624,ZSWIM7"
LINK	AGRE	AU3124202_AU3124201	affected	AU3124301	chr17:28942264-28947657	deletion	5394		inter-coding_intronic	1	PHF12
LINK	SSC	13133	affected	13133.p1	chr17:29677780-29689920	deletion	12141		coding	1	SSH2
LINK	SSC	14459	affected	14459.p1	chr17:30621301-30873900	duplication	252600	Sanders 2015	coding	2	"ATAD5,CRLF3"
LINK	SSC	11353	affected	11353.p1	chr17:36375801-37905300	deletion	1529500	Sanders 2015	coding	22	"AATF,ACACA,C17orf78,DDX52,DHRS11,DUSP14,GGNBP2,HNF1B,LHX1,MRM1,MYO19,PIGW,SYNRG,TADA2A,TBC1D3D,TBC1D3F,TBC1D3G,TBC1D3H,TBC1D3I,TBC1D3J,TBC1D3K,ZNHIT3"
LINK	SSC	14643	affected	14643.p1	chr17:36441101-37900227	deletion	1459127	Sanders 2015	coding	20	"AATF,ACACA,C17orf78,DDX52,DHRS11,DUSP14,GGNBP2,HNF1B,LHX1,MRM1,MYO19,PIGW,SYNRG,TADA2A,TBC1D3D,TBC1D3G,TBC1D3H,TBC1D3I,TBC1D3J,ZNHIT3"
LINK	AGRE	AU1355202_AU1355201	affected	AU1355301	chr17:41725949-43439532	duplication	1634700	Leppa 2016	coding	61	"AARSD1,ACLY,AOC2,AOC3,ARL4D,ATP6V0A1,BECN1,BRCA1,C17orf113,CAVIN1,CCDC200,CCR10,CNP,CNTD1,CNTNAP1,COA3,COASY,DHX58,DNAJC7,EZH1,FKBP10,G6PC,GHDC,HAP1,HCRT,HSD17B1,HSPB9,IFI35,JUP,KAT2A,KCNH4,KLHL10,KLHL11,MLX,NAGLU,NBR1,NKIRAS2,NT5C3B,P3H4,PLEKHH3,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,RAB5C,RAMP2,RETREG3,RND2,RPL27,RUNDC1,STAT3,STAT5A,STAT5B,TMEM106A,TTC25,TUBG1,TUBG2,VAT1,VPS25,WNK4,ZNF385C"
LINK	SSC	12221	affected	12221.p1	chr17:43121544-43128023	duplication	6480		coding	1	BRCA1
LINK	SSC	12221	unaffected	12221.s1	chr17:43121544-43128023	duplication	6480		coding	1	BRCA1
LINK	SSC	11982	affected	11982.p1	chr17:46703246-47019504	duplication	316259	Sanders 2015	coding	5	"GOSR2,NSF,RPRML,WNT3,WNT9B"
LINK	SSC	12117	unaffected	12117.s1	chr17:60013101-62264865	duplication	2251765	Sanders 2015	coding	14	"APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,HEATR6,INTS2,MED13,NACA2,PPM1D,TBX2,TBX4,USP32"
LINK	SSC	14084	affected	14084.p1	chr17:75440378-76582968	deletion	1139518	Sanders 2015	coding	39	"AANAT,ACOX1,CASKIN2,CDK3,CYGB,EVPL,EXOC7,FBF1,FOXJ1,GALK1,GALR2,H3F3B,ITGB4,LLGL2,MRPL38,MYO15B,PRCD,PRPSAP1,QRICH2,RECQL5,RHBDF2,RNF157,SAP30BP,SMIM5,SMIM6,SPHK1,SRP68,ST6GALNAC2,TEN1,TMEM94,TRIM47,TRIM65,TSEN54,UBALD2,UBE2O,UNC13D,UNK,WBP2,ZACN"
LINK	SSC	13162	affected	13162.p1	chr18:28930801-28933700	deletion	2900		intergenic	0	
LINK	SSC	12585	unaffected	12585.s1	chr18:34594101-34600300	deletion	6200		peripheral	1	DTNA
LINK	SSC	13972	unaffected	13972.s1	chr18:38755701-38758500	deletion	2800		intergenic	0	
LINK	SSC	13547	affected	13547.p1	chr18:76567079-76573734	deletion	6656		intergenic	0	
LINK	SSC	12295	unaffected	12295.s1	chr19:609155-927182	duplication	318028	Sanders 2015	coding	17	"AZU1,CFD,ELANE,FGF22,FSTL3,HCN2,KISS1R,MED16,MISP,PALM,PLPPR3,POLRMT,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126"
LINK	SSC	14601	unaffected	14601.s1	chr19:2875201-2918800	deletion	43600	Sanders 2015	coding	2	"ZNF556,ZNF57"
LINK	AGRE	AU1178202_AU1178201	affected	AU1178302	chr19:7919616-7925515	deletion	5900		coding	2	"CTXN1,SNAPC2"
LINK	SSC	13018	affected	13018.p1	chr19:14938612-15781333	duplication	842722	Sanders 2015	coding	21	"AKAP8,AKAP8L,BRD4,CASP14,CCDC105,CYP4F12,CYP4F22,CYP4F3,CYP4F8,EPHX3,ILVBL,NOTCH3,OR10H2,OR10H3,OR1I1,OR7C2,PGLYRP2,RASAL3,SLC1A6,SYDE1,WIZ"
LINK	SSC	14313	affected	14313.p1	chr19:17925201-17928200	duplication	3000		intergenic	0	
LINK	SSC	14662	unaffected	14662.s1	chr19:34171301-34176100	deletion	4800		coding	1	LSM14A
LINK	SSC	13335	affected	13335.p1	chr19:37138752-37144828	deletion	6077		intergenic	0	
LINK	SSC	11193	unaffected	11193.s1	chr19:37425301-37464344	deletion	39044	Sanders 2015	coding	1	ZNF569
LINK	SSC	12076	affected	12076.p1	chr19:38673801-38677300	deletion	3500		inter-coding_intronic	1	ACTN4
LINK	AGRE	AU3175202_AU3175201	affected	AU3175303	chr19:44378642-44452414	duplication	73800		coding	2	"ZNF229,ZNF285"
LINK	SSC	13874	affected	13874.p1	chr19:47132506-47184135	duplication	49477		coding	1	SAE1
LINK	SSC	14668	unaffected	14668.s1	chr19:47151001-47154000	deletion	3000		coding	1	SAE1
LINK	SSC	13306	unaffected	13306.s1	chr19:48820101-48846600	duplication	26500		coding	2	"HSD17B14,PLEKHA4"
LINK	SSC	11441	unaffected	11441.s1	chr19:49719682-49737792	deletion	18111		intergenic	0	
LINK	SSC	11986	unaffected	11986.s1	chr19:50909701-50915300	deletion	5600		coding	1	KLK4
LINK	AGRE	AU3175202_AU3175201	affected	AU3175303	chr19:52958348-53197247	deletion	238900		coding	6	"ERVV-1,ERVV-2,ZNF160,ZNF347,ZNF415,ZNF665"
LINK	SSC	14513	affected	14513.p1	chr19:54964236-57146715	duplication	2182480	Sanders 2015	coding	68	"BRSK1,CCDC106,COX6B2,DNAAF3,EDDM13,EPN1,EPS8L1,FAM71E2,FIZ1,GALP,GP6,HSPBP1,IL11,ISOC2,KMT5C,NAT14,NLRP11,NLRP13,NLRP2,NLRP4,NLRP5,NLRP8,NLRP9,PEG3,PPP1R12C,PPP6R1,PTPRH,RDH13,RFPL4A,RFPL4AL1,RPL28,SBK2,SBK3,SHISA7,SMIM17,SSC5D,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,U2AF2,UBE2S,USP29,ZFP28,ZIM2,ZIM3,ZNF444,ZNF470,ZNF471,ZNF524,ZNF579,ZNF580,ZNF581,ZNF582,ZNF583,ZNF628,ZNF667,ZNF71,ZNF784,ZNF787,ZNF835,ZNF865,ZSCAN5A,ZSCAN5B,ZSCAN5C"
LINK	SSC	14459	affected	14459.p1	chr19:55020752-55045900	duplication	25149	Sanders 2015	coding	2	"GP6,RDH13"
LINK	SSC	13177	affected	13177.p1	chr20:494101-497100	deletion	3000		coding	1	CSNK2A1
LINK	AGRE	AU0976202_AU0976201	affected	AU0976301	chr20:871058-873957	deletion	2900		coding	1	ANGPT4
LINK	AGRE	AU1667101_AU1667102	affected	AU1667201	chr20:2490455-2495554	deletion	5100		coding	1	ZNF343
LINK	AGRE	AU2458202_AU2458201	affected	AU2458302	chr20:14893755-14954254	deletion	60500		inter-coding_intronic	1	MACROD2
LINK	SSC	13023	unaffected	13023.s1	chr20:18293321-18304651	duplication	11331		coding	1	ZNF133
LINK	SSC	13023	affected	13023.p1	chr20:18321136-18329677	duplication	8542		intergenic	0	
LINK	SSC	13903	unaffected	13903.s1	chr20:25935173-25974376	deletion	39204		noncoding	1	LINC01733
LINK	SSC	14661	affected	14661.p1	chr20:44226501-44230500	duplication	4000		intergenic	0	
LINK	SSC	14661	unaffected	14661.s1	chr20:44226601-44230500	duplication	3900		intergenic	0	
LINK	SSC	14070	unaffected	14070.s1	chr20:46410001-46412700	deletion	2700		noncoding	1	LOC105372633
LINK	SSC	14207	affected	14207.p1	chr20:60194583-60206931	duplication	12349		noncoding	1	MIR646HG
LINK	SSC	13842	affected	13842.p1	chr20:62003601-62010374	deletion	6774		coding	1	TAF4
LINK	SSC	13048	unaffected	13048.s1	chr21:20815001-20822700	deletion	7700		intergenic	0	
LINK	SSC	12618	affected	12618.p1	chr21:35237801-35245100	deletion	7300		intergenic	0	
LINK	SSC	13626	affected	13626.p1	chr21:40073901-40085400	deletion	11500		coding	1	DSCAM
LINK	SSC	13328	affected	13328.p1	chr22:17927001-17929600	deletion	2600		peripheral	1	MICAL3
LINK	SSC	13859	affected	13859.p1	chr22:18943389-20689097	deletion	1745709	Sanders 2015	coding	32	"ARVCF,C22orf39,CCDC188,CDC45,CLDN5,CLTCL1,COMT,DGCR2,DGCR6L,DGCR8,ESS2,GNB1L,GP1BB,GSC2,HIRA,KLHL22,MED15,MRPL40,RANBP1,RTL10,RTN4R,SCARF2,SEPT5,SLC25A1,TANGO2,TBX1,TRMT2A,TSSK2,TXNRD2,UFD1,ZDHHC8,ZNF74"
LINK	SSC	14330	affected	14330.p1	chr22:18943761-21112032	duplication	2168272	Sanders 2015	coding	42	"AIFM3,ARVCF,C22orf39,CCDC188,CDC45,CLDN5,CLTCL1,COMT,CRKL,DGCR2,DGCR6L,DGCR8,ESS2,GNB1L,GP1BB,GSC2,HIRA,KLHL22,LRRC74B,LZTR1,MED15,MRPL40,P2RX6,PI4KA,RANBP1,RTL10,RTN4R,SCARF2,SEPT5,SERPIND1,SLC25A1,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TRMT2A,TSSK2,TXNRD2,UFD1,ZDHHC8,ZNF74"
LINK	SSC	14468	unaffected	14468.s1	chr22:18945212-21114754	deletion	2169543	Sanders 2015	coding	42	"AIFM3,ARVCF,C22orf39,CCDC188,CDC45,CLDN5,CLTCL1,COMT,CRKL,DGCR2,DGCR6L,DGCR8,ESS2,GNB1L,GP1BB,GSC2,HIRA,KLHL22,LRRC74B,LZTR1,MED15,MRPL40,P2RX6,PI4KA,RANBP1,RTL10,RTN4R,SCARF2,SEPT5,SERPIND1,SLC25A1,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TRMT2A,TSSK2,TXNRD2,UFD1,ZDHHC8,ZNF74"
LINK	SSC	11236	unaffected	11236.s1	chr22:28312101-28321700	deletion	9600		inter-coding_intronic	1	TTC28
LINK	SSC	13496	unaffected	13496.s1	chr22:29206101-29220210	duplication	14110		coding	1	EMID1
LINK	SSC	12224	affected	12224.p1	chr22:40099401-40374600	deletion	275200	Sanders 2015	coding	2	"ADSL,TNRC6B"
LINK	SSC	12618	unaffected	12618.s1	chr22:40836501-40842800	deletion	6300		coding	1	ST13
LINK	SSC	11099	unaffected	11099.s1	chr22:44456201-44460200	deletion	4000		intergenic	0	
LINK	SSC	13620	affected	13620.p1	chr22:44482101-44484300	deletion	2200		intergenic	0	
LINK	SSC	14232	affected	14232.p1	chr22:47793301-50800000	deletion	3006700	Sanders 2015	coding	38	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,RABL2B,SBF1,SCO2,SELENOO,SHANK3,SYCE3,TRABD,TTLL8,TUBGCP6,TYMP,ZBED4"
LINK	AGRE	AU1773202_AU1773201	affected	AU1773302	chr22:50683762-50801529	deletion	117768		coding	3	"ACR,RABL2B,SHANK3"