| Id: | hg19/variant_frequencies/gnomAD_v2.1.1/genomes |
| Type: | allele_score |
| Summary: | gnomAD genomes v2.1.1 variants build from ~32,000 whole genome sequencing samples published by the Broad Institute. |
| Description: | gnomAD genomes v2.1.1 liftoverOriginal gnomAD genomes v2.1.1 liftover is downloaded on October 19, 2020 from https://gnomad.broadinstitute.org/. tabix -s 1 -b 2 -e 2 -f gnomad..r2.1.1.extract.tsv.gz |
| Labels: |
|
| id | type | default annotation | description | histogram | range |
|---|---|---|---|---|---|
| ID | str |
None |
variant ID | NO HISTOGRAM | NO DOMAIN |
| AC | int |
genome_gnomad_ac |
Alternative allele count in the whole gnomAD genome samples v2.1.1 |
 |
[0.000, 31416.000] |
| AN | int |
genome_gnomad_an |
Total allele count in the whole gnomAD genome samples v2.1.1 |
 |
[0.000, 31416.000] |
| AF | float |
genome_gnomad_af |
Alternative allele frequency in the whole gnomAD genome samples v2.1.1 |
 |
[0.000, 1.000] |
| AF_percent | float |
genome_gnomad_af_percent |
Alternative allele frequency in the whole gnomAD genome samples v2.1.1 as % |
 |
[0.000, 100.000] |
| controls_AC | int |
genome_gnomad_controls_ac |
Alternative allele count in the controls subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 10884.000] |
| controls_AN | int |
genome_gnomad_controls_an |
gnomAD v2.1.1 liftover genome count of genotyped individuals in control group |
 |
[0.000, 10884.000] |
| controls_AF | float |
genome_gnomad_controls_af |
Alternative allele frequency in the controls subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 1.000] |
| controls_AF_percent | float |
genome_gnomad_controls_af_percent |
Alternative allele frequency in the controls subset of whole gnomAD genome samples v2.1.1 as % |
 |
[0.000, 100.000] |
| non_neuro_AC | int |
genome_gnomad_non_neuro_ac |
Alternative allele count in the non-neuro subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 21272.000] |
| non_neuro_AN | int |
genome_gnomad_non_neuro_an |
Total allele count in the non-neuro subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 21272.000] |
| non_neuro_AF | float |
genome_gnomad_non_neuro_af |
Alternative allele frequency in the non-neuro subset of whole gnomAD genome samples v2.1.1 |
 |
[0.000, 1.000] |
| non_neuro_AF_percent | float |
genome_gnomad_non_neuro_af_percent |
Alternative allele frequency in the non-neuro subset of whole gnomAD genome samples v2.1.1 as % |
 |
[0.000, 100.000] |
| Filename | Size | md5 |
|---|---|---|
| genomic_resource.yaml | 5.17 KB | 06f0dc04443971ddb671939b018a8818 |
| gnomad.genomes.r2.1.1.sites-exported.txt.gz | 12.27 GB | 3a6418c74dcce16a59ba1d9710935c7b |
| gnomad.genomes.r2.1.1.sites-exported.txt.gz.dvc | 118.0 B | ae1397bd81aeb59a2a744e06874e051e |
| gnomad.genomes.r2.1.1.sites-exported.txt.gz.tbi | 2.57 MB | d3b2dc434e68537e5e7f19cae68477aa |
| gnomad.genomes.r2.1.1.sites-exported.txt.gz.tbi.dvc | 118.0 B | 3a4722247603d8f6cbec463d332f5f0b |
| statistics/ |