Resource

Id:hg19/scores/phyloP46_placentals
Type:position_score
Summary: phyloP (phylogenetic p-values) conservation score based on the multiple alignments of the placental mammal species in the phyloP46way alignment. The higher the more conservative.
Description:

phyloP46way placentals

This file is from:

http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP46way/README.txt

This directory contains conservation scoring by phyloP (phylogenetic p-values) from the PHAST package (http://compgen.bscb.cornell.edu/phast/) for multiple alignments of 45 vertebrate genomes to the human genome, plus alternate sets of scores for the primate species and the placental mammal species in the alignments.
Labels:
  • reference_genome: hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174

Scores

id type default annotation description histogram range
phyloP46_placentals float

phylop46_placentals

 The scores is a number that reflects the conservation at a position. HISTOGRAM FOR phyloP46_placentals [-13.796, 2.941]

Files

Filename Size md5
genomic_resource.yaml 1.38 KB c52dc0afe73e29837a17d721a621a053
phyloP46_placentals.bedGraph.gz 14.62 GB 7320447eda8cf799d063ed54a302a16e
phyloP46_placentals.bedGraph.gz.dvc 106.0 B a0f596bca9359a54c3af7baee494185b
phyloP46_placentals.bedGraph.gz.tbi 2.78 MB abf79af3ca4583a4d7bac05be538c4a2
phyloP46_placentals.bedGraph.gz.tbi.dvc 106.0 B 91ce74e70b12a058c3b81aa6103c347c
statistics/