Resource

Id:hg19/scores/phastCons46_primates
Type:position_score
Summary: phastCons46_primates is a conservation score based on the primates subset of species. The larger the score, the more conserved the site. Scores range from 0 to 1.
Description:

phastCons46way primates

This score is from:

http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phastCons46way/README.txt

This resource contains phastCons scores for multiple alignments of 45 vertebrate genomes to the human genome, plus an alternate set of scores for the primates subset of species in the alignments, and an alternate set of scores for the placental mammal subset of species in the alignments.

The multiple alignments and methods description are at: http://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/
Labels:
  • reference_genome: hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174

Scores

id type default annotation description histogram range
phastCons46_primates float

phastcons46_primates

 The scores is a number that reflects the conservation at a position. HISTOGRAM FOR phastCons46_primates [0.000, 1.000]

Files

Filename Size md5
genomic_resource.yaml 1.51 KB f807ff1c5a0771973412f37e594550e5
phastCons46_primates.bedGraph.gz 14.02 GB b7f15b4e9380c69508a7db3817147c49
phastCons46_primates.bedGraph.gz.dvc 107.0 B a4227a74bb842a5743e24e82ad692017
phastCons46_primates.bedGraph.gz.tbi 2.86 MB cc51420816c17db557d7a1ecba5377c2
phastCons46_primates.bedGraph.gz.tbi.dvc 107.0 B 34b20baff523dfd1ae4d0fe14d22f027
statistics/