Resource
| Id | hg19/scores/phastCons46/placentals |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Conservation score based on the multiple alignment of 46 species using placental species |
| Description |
PhastCons score is a measure used to assess the level of evolutionary conservation of genomic sequences. This score is derived from a method called PHAST (Phylogenetic Analysis with Space/Time models), which uses multiple sequence alignments and phylogenetic trees to identify conserved elements across different species. PhastCons scores typically range from 0 to 1. A score closer to 1 suggests high conservation, implying that the sequence has remained largely unchanged through evolution, likely due to selective pressure to maintain its function. A score closer to 0 indicates low conservation, suggesting that the sequence is less critical or more variable across species. Downloaded on: 07/13/24 https://hgdownload.soe.ucsc.edu/goldenPath/hg19/phastCons46way/placentalMammals.phastCons46way.bw |
| Labels |
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| phastCons46_placentals | float |
phastCons46_placentals |
The score is a number that reflects the conservation at a position.
Small values desc: less conserved
Large values desc: more conserved
|
 |
[0, 1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 2845303719 | 90.70% | 1879204183 |
| chr1 | 222439085 | 89.24% | 146528016 |
| chr1_gl000191_random | 99787 | 93.76% | 76998 |
| chr1_gl000192_random | 526709 | 96.20% | 401035 |
| chr2 | 235414844 | 96.80% | 152872766 |
| chr3 | 192355246 | 97.14% | 125415281 |
| chr4 | 185231636 | 96.90% | 121630320 |
| chr4_ctg9_hap1 | 566665 | 95.98% | 460014 |
| chr4_gl000193_random | 163861 | 86.34% | 123203 |
| chr4_gl000194_random | 173374 | 90.55% | 144347 |
| chr5 | 174858190 | 96.65% | 114184244 |
| chr6 | 165363227 | 96.64% | 108022026 |
| chr6_apd_hap1 | 2285859 | 49.45% | 1863181 |
| chr6_cox_hap2 | 4689975 | 97.80% | 3792970 |
| chr6_dbb_hap3 | 4099876 | 88.93% | 3312230 |
| chr6_mann_hap4 | 3957931 | 84.51% | 3209519 |
| chr6_mcf_hap5 | 3723309 | 77.03% | 3003178 |
| chr6_qbl_hap6 | 4205072 | 91.18% | 3390388 |
| chr6_ssto_hap7 | 4044436 | 82.06% | 3274618 |
| chr7 | 152383393 | 95.76% | 100801135 |
| chr7_gl000195_random | 182152 | 99.59% | 140015 |
| chr8 | 140366498 | 95.90% | 90235523 |
| chr8_gl000196_random | 38607 | 99.21% | 33638 |
| chr8_gl000197_random | 37043 | 99.64% | 25149 |
| chr9 | 118312528 | 83.78% | 79312003 |
| chr9_gl000198_random | 41831 | 46.44% | 33300 |
| chr9_gl000199_random | 12763 | 7.51% | 10009 |
| chr9_gl000200_random | 185595 | 99.23% | 165334 |
| chr9_gl000201_random | 36148 | 100.00% | 20536 |
| chr10 | 129681828 | 95.68% | 83736488 |
| chr11 | 128270883 | 95.01% | 83954375 |
| chr11_gl000202_random | 39589 | 98.72% | 26138 |
| chr12 | 128246738 | 95.81% | 85619470 |
| chr13 | 94786078 | 82.30% | 60961531 |
| chr14 | 87156630 | 81.19% | 57941695 |
| chr15 | 80724076 | 78.73% | 53788950 |
| chr16 | 77481435 | 85.75% | 49823645 |
| chr17 | 77059858 | 94.91% | 51106299 |
| chr17_ctg5_hap1 | 1548513 | 92.13% | 1224039 |
| chr17_gl000203_random | 37366 | 99.65% | 28704 |
| chr17_gl000204_random | 81310 | 100.00% | 46396 |
| chr17_gl000205_random | 141726 | 81.18% | 110979 |
| chr17_gl000206_random | 40985 | 99.96% | 28736 |
| chr18 | 73889016 | 94.64% | 46856327 |
| chr18_gl000207_random | 4257 | 99.88% | 2893 |
| chr19 | 53925902 | 91.20% | 38195161 |
| chr19_gl000208_random | 1130 | 1.22% | 1008 |
| chr19_gl000209_random | 159157 | 99.99% | 123745 |
| chr20 | 58911112 | 93.47% | 37506847 |
| chr21 | 34719668 | 72.14% | 22127339 |
| chr21_gl000210_random | 26952 | 97.36% | 21555 |
| chr22 | 34342858 | 66.94% | 22379561 |
| chrM | 16571 | 100.00% | 11201 |
| chrUn_gl000211 | 159648 | 95.85% | 125557 |
| chrUn_gl000212 | 181269 | 97.01% | 136855 |
| chrUn_gl000213 | 163102 | 99.31% | 135625 |
| chrUn_gl000214 | 131154 | 95.23% | 107119 |
| chrUn_gl000215 | 171112 | 99.17% | 139814 |
| chrUn_gl000216 | 47668 | 27.67% | 36135 |
| chrUn_gl000217 | 170959 | 99.31% | 133833 |
| chrUn_gl000218 | 154445 | 95.84% | 129981 |
| chrUn_gl000219 | 138835 | 77.48% | 106751 |
| chrUn_gl000220 | 155530 | 96.12% | 108030 |
| chrUn_gl000221 | 145793 | 93.82% | 115851 |
| chrUn_gl000222 | 184243 | 98.60% | 156588 |
| chrUn_gl000223 | 172784 | 95.75% | 140240 |
| chrUn_gl000224 | 89548 | 49.83% | 74991 |
| chrUn_gl000225 | 101799 | 48.21% | 75906 |
| chrUn_gl000227 | 124473 | 96.96% | 103583 |
| chrUn_gl000228 | 113970 | 88.27% | 81518 |
| chrUn_gl000229 | 19533 | 98.09% | 15310 |
| chrUn_gl000230 | 25989 | 59.48% | 22098 |
| chrUn_gl000231 | 27208 | 99.35% | 22131 |
| chrUn_gl000232 | 37363 | 91.91% | 30727 |
| chrUn_gl000233 | 27024 | 58.82% | 23323 |
| chrUn_gl000234 | 40487 | 99.89% | 33310 |
| chrUn_gl000235 | 31766 | 92.14% | 23737 |
| chrUn_gl000236 | 38687 | 92.26% | 33679 |
| chrUn_gl000237 | 42612 | 92.90% | 36674 |
| chrUn_gl000238 | 39813 | 99.68% | 32424 |
| chrUn_gl000239 | 31016 | 91.70% | 25965 |
| chrUn_gl000240 | 41620 | 99.25% | 36764 |
| chrUn_gl000241 | 42152 | 100.00% | 33412 |
| chrUn_gl000242 | 43523 | 100.00% | 31754 |
| chrUn_gl000243 | 38808 | 89.54% | 32439 |
| chrUn_gl000244 | 39772 | 99.61% | 35135 |
| chrUn_gl000245 | 36651 | 100.00% | 28101 |
| chrUn_gl000246 | 37184 | 97.46% | 32073 |
| chrUn_gl000247 | 33787 | 92.77% | 28958 |
| chrUn_gl000248 | 39645 | 99.65% | 29464 |
| chrUn_gl000249 | 38502 | 100.00% | 25739 |
| chrX | 143108632 | 92.17% | 100913557 |
| chrY | 21946335 | 36.96% | 17664974 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 1879204183 | 1 | 5042 | 1.51 | 1 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| genomic_resource.yaml | 1.83 KB | 7ec9620392c71f09de27f8dc15660f96 |
| placentalMammals.phastCons46way.bw | 20.18 GB | 8adea21d392316ab45b479485cfe2962 |
| statistics/ |