| Id: | hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174 |
| Type: | genome |
| Version: | 0 |
| Summary: |
HG19 reference genome |
| Description: |
HG19 Reference GenomeDefault HG19 reference genome used by GPF |
| Labels: |
X chromosome:
Y chromosome:
| Chrom | Length | A | T | C | G | N |
|---|---|---|---|---|---|---|
| Global | 3,101,810,122 | 27.27% | 27.31% | 18.88% | 18.89% | 7.64% |
| 1 | 249,250,621 | 26.31% | 26.35% | 18.87% | 18.86% | 9.62% |
| 2 | 243,199,373 | 29.24% | 29.29% | 19.70% | 19.72% | 2.05% |
| 3 | 198,022,430 | 29.65% | 29.67% | 19.52% | 19.53% | 1.63% |
| 4 | 191,154,276 | 30.31% | 30.32% | 18.77% | 18.78% | 1.83% |
| 5 | 180,915,260 | 29.67% | 29.74% | 19.40% | 19.42% | 1.78% |
| 6 | 171,115,067 | 29.54% | 29.53% | 19.37% | 19.38% | 2.17% |
| 7 | 159,138,663 | 28.90% | 28.94% | 19.90% | 19.88% | 2.38% |
| 8 | 146,364,022 | 29.22% | 29.18% | 19.61% | 19.61% | 2.37% |
| 9 | 141,213,431 | 24.97% | 24.96% | 17.58% | 17.57% | 14.92% |
| 10 | 135,534,747 | 28.28% | 28.32% | 20.15% | 20.14% | 3.11% |
| 11 | 135,006,516 | 28.37% | 28.38% | 20.17% | 20.20% | 2.87% |
| 12 | 133,851,895 | 28.84% | 28.86% | 19.90% | 19.89% | 2.52% |
| 13 | 115,169,878 | 25.47% | 25.55% | 15.99% | 15.99% | 17.00% |
| 14 | 107,349,540 | 24.21% | 24.40% | 16.79% | 16.83% | 17.76% |
| 15 | 102,531,392 | 23.04% | 23.02% | 16.82% | 16.80% | 20.32% |
| 16 | 90,354,753 | 24.04% | 24.16% | 19.51% | 19.59% | 12.69% |
| 17 | 81,195,210 | 26.06% | 26.12% | 21.83% | 21.80% | 4.19% |
| 18 | 78,077,248 | 28.77% | 28.80% | 19.01% | 19.04% | 4.38% |
| 19 | 59,128,983 | 24.34% | 24.40% | 22.79% | 22.85% | 5.61% |
| 20 | 63,025,520 | 26.22% | 26.54% | 20.80% | 20.86% | 5.59% |
| 21 | 48,129,895 | 21.66% | 21.50% | 14.88% | 14.91% | 27.06% |
| 22 | 51,304,566 | 17.73% | 17.65% | 16.33% | 16.31% | 31.99% |
| X | 155,270,560 | 29.40% | 29.48% | 19.20% | 19.23% | 2.69% |
| Y | 59,373,566 | 11.73% | 11.83% | 7.54% | 7.61% | 61.29% |
| MT | 16,569 | 30.93% | 24.71% | 31.27% | 13.09% | 0.01% |
| GL000207.1 | 4,262 | 23.56% | 32.50% | 13.80% | 30.15% | 0.00% |
| GL000226.1 | 15,008 | 30.00% | 30.98% | 17.50% | 21.53% | 0.00% |
| GL000229.1 | 19,913 | 20.00% | 29.85% | 27.04% | 23.11% | 0.00% |
| GL000231.1 | 27,386 | 25.93% | 29.41% | 22.65% | 22.01% | 0.00% |
| GL000210.1 | 27,682 | 22.72% | 22.82% | 27.91% | 26.19% | 0.36% |
| GL000239.1 | 33,824 | 27.26% | 27.34% | 21.49% | 23.91% | 0.00% |
| GL000235.1 | 34,474 | 34.36% | 27.64% | 19.10% | 18.90% | 0.00% |
| GL000201.1 | 36,148 | 19.64% | 20.91% | 28.70% | 30.75% | 0.00% |
| GL000247.1 | 36,422 | 30.21% | 26.19% | 21.40% | 22.20% | 0.00% |
| GL000245.1 | 36,651 | 35.13% | 28.56% | 18.30% | 18.01% | 0.00% |
| GL000197.1 | 37,175 | 23.25% | 22.62% | 26.59% | 27.28% | 0.27% |
| GL000203.1 | 37,498 | 33.51% | 33.21% | 16.20% | 17.09% | 0.00% |
| GL000246.1 | 38,154 | 27.36% | 33.99% | 19.27% | 19.37% | 0.00% |
| GL000249.1 | 38,502 | 28.03% | 25.19% | 23.32% | 23.46% | 0.00% |
| GL000196.1 | 38,914 | 35.57% | 24.78% | 20.33% | 19.32% | 0.00% |
| GL000248.1 | 39,786 | 25.42% | 28.92% | 23.29% | 22.37% | 0.00% |
| GL000244.1 | 39,929 | 27.42% | 28.95% | 21.45% | 22.18% | 0.00% |
| GL000238.1 | 39,939 | 26.05% | 33.95% | 19.54% | 20.46% | 0.00% |
| GL000202.1 | 40,103 | 23.01% | 22.39% | 28.06% | 26.54% | 0.00% |
| GL000234.1 | 40,531 | 26.64% | 30.29% | 21.53% | 21.54% | 0.00% |
| GL000232.1 | 40,652 | 28.37% | 29.80% | 20.88% | 20.94% | 0.00% |
| GL000206.1 | 41,001 | 21.39% | 25.52% | 25.57% | 27.52% | 0.00% |
| GL000240.1 | 41,933 | 32.44% | 25.02% | 21.37% | 21.18% | 0.00% |
| GL000236.1 | 41,934 | 31.02% | 27.35% | 20.11% | 21.52% | 0.00% |
| GL000241.1 | 42,152 | 32.31% | 30.40% | 18.66% | 18.63% | 0.00% |
| GL000243.1 | 43,341 | 24.75% | 29.24% | 23.77% | 22.23% | 0.00% |
| GL000242.1 | 43,523 | 24.33% | 27.27% | 23.05% | 25.34% | 0.00% |
| GL000230.1 | 43,691 | 29.02% | 29.27% | 21.37% | 20.34% | 0.00% |
| GL000237.1 | 45,867 | 26.76% | 26.58% | 22.33% | 24.34% | 0.00% |
| GL000233.1 | 45,941 | 26.54% | 31.04% | 20.69% | 21.73% | 0.00% |
| GL000204.1 | 81,310 | 24.23% | 21.30% | 27.92% | 26.55% | 0.00% |
| GL000198.1 | 90,085 | 30.91% | 31.24% | 17.34% | 20.52% | 0.00% |
| GL000208.1 | 92,689 | 31.48% | 30.86% | 19.82% | 17.84% | 0.00% |
| GL000191.1 | 106,433 | 26.28% | 29.37% | 22.35% | 22.00% | 0.00% |
| GL000227.1 | 128,374 | 32.00% | 26.99% | 20.45% | 20.56% | 0.00% |
| GL000228.1 | 129,120 | 23.63% | 22.43% | 27.49% | 26.45% | 0.00% |
| GL000214.1 | 137,718 | 29.51% | 28.97% | 19.96% | 21.56% | 0.00% |
| GL000221.1 | 155,397 | 30.83% | 30.53% | 19.23% | 19.40% | 0.00% |
| GL000209.1 | 159,169 | 27.63% | 25.87% | 22.27% | 24.23% | 0.00% |
| GL000218.1 | 161,147 | 28.56% | 29.82% | 20.66% | 20.96% | 0.00% |
| GL000220.1 | 161,802 | 23.01% | 28.53% | 25.17% | 23.30% | 0.00% |
| GL000213.1 | 164,239 | 29.25% | 29.84% | 20.60% | 20.30% | 0.00% |
| GL000211.1 | 166,566 | 30.57% | 30.72% | 19.19% | 19.52% | 0.00% |
| GL000199.1 | 169,874 | 32.20% | 29.88% | 20.59% | 17.32% | 0.00% |
| GL000217.1 | 172,149 | 30.17% | 32.24% | 18.92% | 18.66% | 0.00% |
| GL000216.1 | 172,294 | 24.03% | 33.99% | 27.11% | 14.86% | 0.00% |
| GL000215.1 | 172,545 | 29.17% | 28.83% | 21.01% | 20.99% | 0.00% |
| GL000205.1 | 174,588 | 28.21% | 30.05% | 21.03% | 20.70% | 0.00% |
| GL000219.1 | 179,198 | 30.43% | 29.61% | 19.81% | 20.15% | 0.00% |
| GL000224.1 | 179,693 | 27.96% | 28.75% | 20.83% | 22.46% | 0.00% |
| GL000223.1 | 180,455 | 29.33% | 27.47% | 21.53% | 21.67% | 0.00% |
| GL000195.1 | 182,896 | 29.23% | 30.10% | 20.24% | 20.42% | 0.00% |
| GL000212.1 | 186,858 | 28.22% | 27.40% | 22.72% | 21.66% | 0.00% |
| GL000222.1 | 186,861 | 27.58% | 28.45% | 21.87% | 22.10% | 0.00% |
| GL000200.1 | 187,035 | 29.59% | 30.46% | 19.89% | 20.06% | 0.00% |
| GL000193.1 | 189,789 | 28.19% | 29.01% | 21.40% | 21.40% | 0.00% |
| GL000194.1 | 191,469 | 27.65% | 29.09% | 21.69% | 21.57% | 0.00% |
| GL000225.1 | 211,173 | 26.97% | 25.38% | 23.17% | 24.48% | 0.00% |
| GL000192.1 | 547,496 | 29.79% | 28.72% | 20.59% | 20.90% | 0.00% |
| phiX | 5,386 | 23.97% | 31.27% | 21.48% | 23.28% | 0.00% |
| A | T | C | G | N | |
|---|---|---|---|---|---|
| A | 9.03% | 7.14% | 4.65% | 6.46% | 0.00% |
| T | 6.06% | 9.05% | 5.48% | 6.71% | 0.00% |
| C | 6.70% | 6.46% | 4.81% | 0.91% | 0.00% |
| G | 5.48% | 4.66% | 3.94% | 4.81% | 0.00% |
| N | 0.00% | 0.00% | 0.00% | 0.00% | 7.64% |
| Filename | Size | md5 |
|---|---|---|
| README.txt | 450.0 B | 19813221aff2b8cfba3f42954bf9d1f3 |
| chrAll.fa | 2.94 GB | 6e399411b0338bd267f37a4b76ad936b |
| chrAll.fa.dvc | 83.0 B | c0738e5f26e6d81f6732971d1201480e |
| chrAll.fa.fai | 2.71 KB | a449540ce2cb85046d2538c0c4b1a729 |
| genomic_resource.yaml | 338.0 B | d9154c008fce5b3a33fd17df7efdc8af |
| statistics/ |