Resource

Id:gene_properties/gene_scores/LGD
Type:gene_score
Summary: Gene vulnerability/intollerance score based on the rare LGD variants.
Description:

The LGD vulnerability score is described in https://pubmed.ncbi.nlm.nih.gov/26401017 and is based on relating the observed and expected numbers of ultra-rare LGD variants, where the expected number of ultra-rare LGDs in a gene is computed through a regression to the number of ultra-rare synonymous variants. The score is defined as the cumulative distribution function at the observed number of UR LGD variants of a Poisson distribution with a parameter equal to the expected number of UR LGD variants.

Labels:

Gene scores file:

LGD.csv

Gene score definitions:

Gene score ID: LGD_rank

Description:

Gene score ID: LGD_score

Description:

Histograms:

LGD_rank

LGD_rank

LGD_score

LGD_score

Files

Filename Size md5
LGD.csv 497.77 KB 4e9f0967f510d53285a51dfc33b4d06c
genomic_resource.yaml 1.45 KB 07455e12780ba4c0a6d1c06af2190ccf
statistics/